SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27212

Length: 3903 nt

UniGene Fasta

>sp_v3.0_unigene27212
ATCAAGTTTCGTTGAAGAATTTGATAGACTTCGGTGCCAACGAGAAAACAACATGACACTAGCTTCATGGCTTGCTTCTGTTAAAATTGGAACGGGTTTTGCGCTTTGAGTTCACTCTTTTGAAGTACTGTTTTTAGCGGAATTCTGGTTTTATTCAGTGAAAGACGCTGGCATGGTGATCGAGGAAGCCGGATTTCTGAGACTTAACGACAGATAAGCGCGATAGGCGGGCGATTAACGGTGGCGAGTAGAAGAATTACATATATGTTAGTGAAGATAGGCCTTGCTATCAGTCTTTCGGTTACAGCTTACATATTGACTCATCTGAGATTTAGGCCTGTCAATCGAAAGACTATCAGAGGATCGGATGCTCAGGGAGAGTTAGGAAACTCTAACAAGAAGGCTCAAGACAATGTGGAAATCAAGAAAGAAATATGTTCGTACACGAAAGTGGACTCAACACAGGAAAATGATATGGGGGTCGTTAAAAGAGTTGATAGCATTAGTCCATCACTGAGCTTGGCCAATGACGATCTCCTCTTGCCAGAGTTCAATGCACTTTTATCAGGAGAGATCGAGTTTCCTTTGGAAGAGGTTGTTCCATCTTCTAAACCTACACAGTCTGGTGGTGAGGAGAAGCAGGTTATTGCAGTAGATCCTCATATAATTCCTGAGGAATATAAGCACATGTACGAGGAGGCAATTTCAGATAATGCTGCCGAAATTGAGAGATTGAAGAATCTTGTAGAAGAATTGCAGAAAAGTGAAGAAAATCTTCAAGGGGAATTGCTGGAGTATTATGGTCTCACGGAACAGGAAACAAACATAGTAGAACTACAAAAACGGCTCCAACTAAACACGGTTGAGATTGAAATGCTCAATTTAAAACTGAATTCTTTGGAAACTCAAAAGAAGAAACTTGAAGAGGAAGTAGAGGAATCTTCCCTAGTAAAGAAAGAGCTTGAATCTGCCAGAGCAATGATTAAAGAACTTCAGAGACAGACACAAATGGAATCTATGCAGACAAAAGAGCAACTTCTTATGCTCAACCAACAAGTTGCAGTTCTTCAAGACACTGAGAAAAAGTATTCTGAAAAGAAATTCGAGATTGAGAAGAAACTGCAGACTTTGAAAGATCTAGAAATCGAAGTGGTGGAATTAAGAAGGGCCAACAAAGAGTTGCAACATGAGAAGCGGGAGCTGATGCTGAAACTAGACAATGCAGAAACCCAAATTGCTTCCCTCTCTAAAATAACAGAGACAGAGACAATGCAAAAGGCAAGAGAAGAGCTGAAAACTTTGAGGCATGTGAATGAAGATCTGTTAAAGCAAGTGGAAGGTCTGCAAAATAATCGATTTAGTGAAGTGGAAGAACTGGTGTATTTAAGATGGGTTAATGCATGTCTACGCTATGAATTAAGGAACTACCAACCCCCTCCAGGAAAACTGACAGCACGACATCTCAACAAAAGCTTGAGCCCAAGGTCACAGGAGAATGCAAAGCAGCTTATGTTGGAATATGCAGGACATGATTCTCTAGCATTACATGACAAAGAGTGTACAGATAATGACTCCAAGAGTCCATCATCCCATACATCAACACCTCCTGAGAGTTGTGATTTTGATGAATCCTCTTTAGACAGCACCTCTACCAGACTAACCCGATCGAAGAAACCAAGCCTAATTCACAAGCTAAAAAGATGGGGGAGAAGTAAGGAGGGTTCTGCAGTGTCATCAGTTAGATCAGCTGGAGACAGAAGAGGAACTGGGCCTATTACAGGTTACAGAAGTCCAGGGCATGAAAGTCCAGGGTACAGAAGTCCAGGGCACAGAAGTCCAGGGCATGAAAGTCCAGGGCACAGAAGTCCAGGGCACGAAAGTCCAGGGCACAAACAGTCTATTTCAGTTAGCTCGTTAGAATATATAATGCCGATAAGTTCAAGCACTGATGCTTCCGTTGCCTCTTTAACAAGACACAATGGCCCCAAAACAAAGGCAAGGTCGAAATCAGATACTTTCCTTGAGACACATGATCTTGCAGCAATGGTTGATTCTCCTAAAAAGGATGACTATCATACATCAAGAAAAGCTCTGGATATGAGTGACTCATTAATCAATGTGGCAACTTCATTTCAACTTATGTCAAAGTCTGTGGGAGGCATGCATGGTGGGGAGCATCCTGACTCTAAAGTCAGACATAATTTATCAATACAGAGAGAGAATGACATCAAAGAAAGAGCAGAGCAAGCAAGAGCAGCAAAGTTTTCTGAAAAATTGAAAACTGAGGCACTGGCTGAAAGGGTTATGTCAGAGAAGTTTATAGACACTATTCAAACAAGGGAATCTCAAATTGATTCAAAAAATGGCAATGACCGTGAAAGCAAGGAGCCTGAAATTAGCAAAATGACATTTAAAGGAGTACAAAAGAGGGCTCCGAGGGTTGCAAAGAAACCTCCAAAGCCATCCACTGGTTCTTTGACATACAGTAATGCTTCATCAAAAGCTTCCCATGCCATACCTATCTCCCCACCTCCTCCACCTCAACCTCCAGCTGCCCCTGGTATGATTCCAACTCCACCAGCACCTCCAACTGGCATCCCAATTGAATCTCAAGGCAGAGCAGGAGATAAAGTGCAAAGAGTGCCACAGGTAGTTGAATTCTATCAATCGCTAGTGAAAAGAGAAGTGCAAAAGGAAATTTCGAATGTGGCATCCACAGCATCAACCAACATTTCAGATACTTGTACTAACATGATTGGAGAGTTTGGAAGCAAATCTGCATATCTTTTATCTGTTAAAGCTGATGTGGAGAGTCAAGGTGACTTTGTTCAATCACTGGCAAACGAAGTTCGGGCAGCTGCTTACACAAACATTAAAGATGTTGTTGACTTTGTGCACTGGTTGGATGAAGAACTATCGTTTTTGGTTGACGAGCGTGCAGTTCTTAAGCATTTTGATTGGCCCGAGGGTAAAGCTGATACTTTGAGGGAAGCAGCATTTGAATATCAAGATTTGCAAAGGTTGGAGTCAGAAATTGCTTCCTTTGTTGATGATCCAATACTTTCTCGTGACACGGCCCTCCATAGGATGTACTCCTTACTTGAATCAGTTGAGAAAAGTATGTATGCCCTTCTACGCACACGAGATATAGTAGTTGCTCGCTATAAAGAGTTCAATATTCCTATTTACTGGCTGCTCGATTCTGGCCTTGTCGGCAAGATTAAATTTGCTTGTGTCCAACTCGCAAGAAAGTACATGGAGCGTGTGGCATCTGAGCTGGATGGTATTGCAAATATCTCAGAAAAGGAACCAGTTAGAGAGTTTCTACTTCTGCAGGGAGTGCGTTTCGCCTTTCGCGTTCACCAGTTTGCTGGAGGTTTTGATGAAGAGAGTATGCGAGCATTTGAGAGTCTCAGAAGGCGTGCTCAGGAGCAGACTAGAGAAGAAAACTAAGCAGCGATTACAGATTAATCTTCAAATCCAACCTAAATTTCCTGTTGAAAAAGAATAGATGTATCATATTTCAGAAGTCGGTTAGGTTGACCAAAGTCAACCAACCCTTTGTATTAGTGTTAGTTGCACTAATTTAAGATGAAGTAAAAGCATAAAACATAATGAACCCAAGATGCATGTAAAAATCCAAAATGCGTCTCTGATTTAGTATTGCCTCATGTGGATAAAGCGTATTCTCCATTTTAGAGTTCTCATCACATGACCTTTAGTTAGACTAACCTTGAAATCCACCTGCATGGAGTTTTGATCGAACTTTTTCACTGTAGTATTGTTATCATTCTGACTTGACAGACGTCAATGGAGTTATGATTAGTAATTTCATGCGTTAACGAGAAAAACACTTATCGATATACACATTGAAAGGTTGGTGATATACTTCAATTCCAACGT

Ace file of the UniGene sp_v3.0_unigene27212

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) n=1 Tax=Vitis vinifera RepID=UPI0001982883	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Chloroplast unusual positioning 1A	-	-	2.694e-09	-

Source	Gene names
Sma3	At3g25690; At4g18570; B1097D05.4; CHUP1; CHUP1A; CHUP1B; GSVIVT00029855001; GSVIVT00030273001; GSVIVT00035896001; LOC_Os03g18300; OJ1268_B08.2; OJ1735_C10.20; OSJNBb0032K15.8; Os01g0652000; Os03g0294100; Os05g0573900; Os08g0129600; Os12g0105300; OsI_03090

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25690.1	CHUP1 Hydroxyproline-rich glycoprotein family protein chr3:9354061-9357757 FORWARD LENGTH=1004	46%
RefSeq	Arabidopsis thaliana	NP_001189974.1	protein CHUP1 [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002315963.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN1

Fln msg: your sequence is longer than subject: 1063 - 314

Fln protein: MLVKIGLAISLSVTAYILTHLRFRPVNRKTIRGSDAQGELGNSNKKAQDNVEIKKEICSYTKVDSTQENDMGVVKRVDSISPSLSLANDDLLLPEFNALLSGEIEFPLEEVVPSSKPTQSGGEEKQVIAVDPHIIPEEYKHMYEEAISDNAAEIERLKNLVEELQKSEENLQGELLEYYGLTEQETNIVELQKRLQLNTVEIEMLNLKLNSLETQKKKLEEEVEESSLVKKELESARAMIKELQRQTQMESMQTKEQLLMLNQQVAVLQDTEKKYSEKKFEIEKKLQTLKDLEIEVVELRRANKELQHEKRELMLKLDNAETQIASLSKITETETMQKAREELKTLRHVNEDLLKQVEGLQNNRFSEVEELVYLRWVNACLRYELRNYQPPPGKLTARHLNKSLSPRSQENAKQLMLEYAGHDSLALHDKECTDNDSKSPSSHTSTPPESCDFDESSLDSTSTRLTRSKKPSLIHKLKRWGRSKEGSAVSSVRSAGDRRGTGPITGYRSPGHESPGYRSPGHRSPGHESPGHRSPGHESPGHKQSISVSSLEYIMPISSSTDASVASLTRHNGPKTKARSKSDTFLETHDLAAMVDSPKKDDYHTSRKALDMSDSLINVATSFQLMSKSVGGMHGGEHPDSKVRHNLSIQRENDIKERAEQARAAKFSEKLKTEALAERVMSEKFIDTIQTRESQIDSKNGNDRESKEPEISKMTFKGVQKRAPRVAKKPPKPSTGSLTYSNASSKASHAIPISPPPPPQPPAAPGMIPTPPAPPTGIPIESQGRAGDKVQRVPQVVEFYQSLVKREVQKEISNVASTASTNISDTCTNMIGEFGSKSAYLLSVKADVESQGDFVQSLANEVRAAAYTNIKDVVDFVHWLDEELSFLVDERAVLKHFDWPEGKADTLREAAFEYQDLQRLESEIASFVDDPILSRDTALHRMYSLLESVEKSMYALLRTRDIVVARYKEFNIPIYWLLDSGLVGKIKFACVQLARKYMERVASELDGIANISEKEPVREFLLLQGVRFAFRVHQFAGGFDEESMRAFESLRRRAQEQTREEN*

Protein Length: 1064

Fln nts: ATCAAGTTTCGTTGAAGAATTTGATAGACTTCGGTGCCAACGAGAAAACAACATGACACTAGCTTCATGGCTTGCTTCTGTTAAAATTGGAACGGGTTTTGCGCTTTGAGTTCACTCTTTTGAAGTACTGTTTTTAGCGGAATTCTGGTTTTATTCAGTGAAAGACGCTGGCATGGTGATCGAGGAAGCCGGATTTCTGAGACTTAACGACAGATAAGCGCGATAGGCGGGCGATTAACGGTGGCGAGTAGAAGAATTACATAT_-_ATGTTAGTGAAGATAGGCCTTGCTATCAGTCTTTCGGTTACAGCTTACATATTGACTCATCTGAGATTTAGGCCTGTCAATCGAAAGACTATCAGAGGATCGGATGCTCAGGGAGAGTTAGGAAACTCTAACAAGAAGGCTCAAGACAATGTGGAAATCAAGAAAGAAATATGTTCGTACACGAAAGTGGACTCAACACAGGAAAATGATATGGGGGTCGTTAAAAGAGTTGATAGCATTAGTCCATCACTGAGCTTGGCCAATGACGATCTCCTCTTGCCAGAGTTCAATGCACTTTTATCAGGAGAGATCGAGTTTCCTTTGGAAGAGGTTGTTCCATCTTCTAAACCTACACAGTCTGGTGGTGAGGAGAAGCAGGTTATTGCAGTAGATCCTCATATAATTCCTGAGGAATATAAGCACATGTACGAGGAGGCAATTTCAGATAATGCTGCCGAAATTGAGAGATTGAAGAATCTTGTAGAAGAATTGCAGAAAAGTGAAGAAAATCTTCAAGGGGAATTGCTGGAGTATTATGGTCTCACGGAACAGGAAACAAACATAGTAGAACTACAAAAACGGCTCCAACTAAACACGGTTGAGATTGAAATGCTCAATTTAAAACTGAATTCTTTGGAAACTCAAAAGAAGAAACTTGAAGAGGAAGTAGAGGAATCTTCCCTAGTAAAGAAAGAGCTTGAATCTGCCAGAGCAATGATTAAAGAACTTCAGAGACAGACACAAATGGAATCTATGCAGACAAAAGAGCAACTTCTTATGCTCAACCAACAAGTTGCAGTTCTTCAAGACACTGAGAAAAAGTATTCTGAAAAGAAATTCGAGATTGAGAAGAAACTGCAGACTTTGAAAGATCTAGAAATCGAAGTGGTGGAATTAAGAAGGGCCAACAAAGAGTTGCAACATGAGAAGCGGGAGCTGATGCTGAAACTAGACAATGCAGAAACCCAAATTGCTTCCCTCTCTAAAATAACAGAGACAGAGACAATGCAAAAGGCAAGAGAAGAGCTGAAAACTTTGAGGCATGTGAATGAAGATCTGTTAAAGCAAGTGGAAGGTCTGCAAAATAATCGATTTAGTGAAGTGGAAGAACTGGTGTATTTAAGATGGGTTAATGCATGTCTACGCTATGAATTAAGGAACTACCAACCCCCTCCAGGAAAACTGACAGCACGACATCTCAACAAAAGCTTGAGCCCAAGGTCACAGGAGAATGCAAAGCAGCTTATGTTGGAATATGCAGGACATGATTCTCTAGCATTACATGACAAAGAGTGTACAGATAATGACTCCAAGAGTCCATCATCCCATACATCAACACCTCCTGAGAGTTGTGATTTTGATGAATCCTCTTTAGACAGCACCTCTACCAGACTAACCCGATCGAAGAAACCAAGCCTAATTCACAAGCTAAAAAGATGGGGGAGAAGTAAGGAGGGTTCTGCAGTGTCATCAGTTAGATCAGCTGGAGACAGAAGAGGAACTGGGCCTATTACAGGTTACAGAAGTCCAGGGCATGAAAGTCCAGGGTACAGAAGTCCAGGGCACAGAAGTCCAGGGCATGAAAGTCCAGGGCACAGAAGTCCAGGGCACGAAAGTCCAGGGCACAAACAGTCTATTTCAGTTAGCTCGTTAGAATATATAATGCCGATAAGTTCAAGCACTGATGCTTCCGTTGCCTCTTTAACAAGACACAATGGCCCCAAAACAAAGGCAAGGTCGAAATCAGATACTTTCCTTGAGACACATGATCTTGCAGCAATGGTTGATTCTCCTAAAAAGGATGACTATCATACATCAAGAAAAGCTCTGGATATGAGTGACTCATTAATCAATGTGGCAACTTCATTTCAACTTATGTCAAAGTCTGTGGGAGGCATGCATGGTGGGGAGCATCCTGACTCTAAAGTCAGACATAATTTATCAATACAGAGAGAGAATGACATCAAAGAAAGAGCAGAGCAAGCAAGAGCAGCAAAGTTTTCTGAAAAATTGAAAACTGAGGCACTGGCTGAAAGGGTTATGTCAGAGAAGTTTATAGACACTATTCAAACAAGGGAATCTCAAATTGATTCAAAAAATGGCAATGACCGTGAAAGCAAGGAGCCTGAAATTAGCAAAATGACATTTAAAGGAGTACAAAAGAGGGCTCCGAGGGTTGCAAAGAAACCTCCAAAGCCATCCACTGGTTCTTTGACATACAGTAATGCTTCATCAAAAGCTTCCCATGCCATACCTATCTCCCCACCTCCTCCACCTCAACCTCCAGCTGCCCCTGGTATGATTCCAACTCCACCAGCACCTCCAACTGGCATCCCAATTGAATCTCAAGGCAGAGCAGGAGATAAAGTGCAAAGAGTGCCACAGGTAGTTGAATTCTATCAATCGCTAGTGAAAAGAGAAGTGCAAAAGGAAATTTCGAATGTGGCATCCACAGCATCAACCAACATTTCAGATACTTGTACTAACATGATTGGAGAGTTTGGAAGCAAATCTGCATATCTTTTATCTGTTAAAGCTGATGTGGAGAGTCAAGGTGACTTTGTTCAATCACTGGCAAACGAAGTTCGGGCAGCTGCTTACACAAACATTAAAGATGTTGTTGACTTTGTGCACTGGTTGGATGAAGAACTATCGTTTTTGGTTGACGAGCGTGCAGTTCTTAAGCATTTTGATTGGCCCGAGGGTAAAGCTGATACTTTGAGGGAAGCAGCATTTGAATATCAAGATTTGCAAAGGTTGGAGTCAGAAATTGCTTCCTTTGTTGATGATCCAATACTTTCTCGTGACACGGCCCTCCATAGGATGTACTCCTTACTTGAATCAGTTGAGAAAAGTATGTATGCCCTTCTACGCACACGAGATATAGTAGTTGCTCGCTATAAAGAGTTCAATATTCCTATTTACTGGCTGCTCGATTCTGGCCTTGTCGGCAAGATTAAATTTGCTTGTGTCCAACTCGCAAGAAAGTACATGGAGCGTGTGGCATCTGAGCTGGATGGTATTGCAAATATCTCAGAAAAGGAACCAGTTAGAGAGTTTCTACTTCTGCAGGGAGTGCGTTTCGCCTTTCGCGTTCACCAGTTTGCTGGAGGTTTTGATGAAGAGAGTATGCGAGCATTTGAGAGTCTCAGAAGGCGTGCTCAGGAGCAGACTAGAGAAGAAAACTAA___GCAGCGATTACAGATTAATCTTCAAATCCAACCTAAATTTCCTGTTGAAAAAGAATAGATGTATCATATTTCAGAAGTCGGTTAGGTTGACCAAAGTCAACCAACCCTTTGTATTAGTGTTAGTTGCACTAATTTAAGATGAAGTAAAAGCATAAAACATAATGAACCCAAGATGCATGTAAAAATCCAAAATGCGTCTCTGATTTAGTATTGCCTCATGTGGATAAAGCGTATTCTCCATTTTAGAGTTCTCATCACATGACCTTTAGTTAGACTAACCTTGAAATCCACCTGCATGGAGTTTTGATCGAACTTTTTCACTGTAGTATTGTTATCATTCTGACTTGACAGACGTCAATGGAGTTATGATTAGTAATTTCATGCGTTAACGAGAAAAACACTTATCGATATACACATTGAAAGGTTGGTGATATACTTCAATTCCAACGT

Fln Alignment:

Contig27212___ESQGRAGDKVQRVPQVVEFYQSLVKREVQKEISNVASTASTNISDTCTNMIGEFGSKSAYLLSVKADVESQGDFVQSLANEVRAAAYTNIKDVVDFVHWLDEELSFLVDERAVLKHFDWPEGKADTLREAAFEYQDLQRLESEIASFVDDPILSRDTALHRMYSLLESVEKSMYALLRTRDIVVARYKEFNIPIYWLLDSGLVGKIKFACVQLARKYMERVASELDGIANISEKEPVREFLLLQGVRFAFRVHQFAGGFDEESMRAFESLRRRAQEQTRE
A9NUN1_______________KSQGPSGNKVHRAPELVEFYQSLMKREAKKEAATMASAAS-NVADVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRASAYKNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKRLESVAASFVDNPNLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNDPDKEPIKEFLLLQGVRFAFRVHQFAGGFDAESMNAFEDLRNRVHGQAEE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
417	14		85		0.993533
2565		12	87		0.992554
2628	16			16	0.988813
2629	16			83	0.994512
2636	16			16	0.988813
2698	83			16	0.994512
2729	20	80			0.995493
2807		25		75	0.996473
2812	75		25		0.996473
2813		33	66		0.997452
2815			66	33	0.997452
3673		66		33	0.997452
3816	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain