SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27176

Length: 503 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene27176
CGCCTCTCCAAGATCGACCCCTTCAACTCGCCCGAGACGGCCAACCTGAAGAACCACAAGGAGATCGCTCCGATGGCCTCGCTGGCGTTCGCGTACACCAACAACGACATCCAGCAGTTCGAGAAGATTCTGCGCGACAACAAGAAGTCGATCCTCGGCGATCCCTTCATCGCGTTCTTCATGAACGACCTCATGCGCGAGGTCCGCACCCAGGTGCTGCTCGAGCTCATCAAGCCGTACACGCGCATCAAGATCCCCTTCTTGGCGAAGGAGCTGAACATCACGGCGTCGGAGGTCGAGTCGCTGCTCGTGGACCTCATCCTCGACAACAAGATCGTCGGCCACATCGACCAGGTGCAGCAGCTGCTGCACTTCCGCTCGGGCACCGTCGCCAACGTGCGCAAGTACGCCGCGATGGAGAAGTGGGCCACTCAGCTGAGCTCGACCACGAACATCGTCGTCAGCCGGTTGAACTGAGCGAGTAAAGCTTGTAATTACTTACC

Ace file of the UniGene sp_v3.0_unigene27176 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome component region PCI domain-containing protein n=2 Tax=Dictyosteliida RepID=F4PVL4_9MYCE	-	-	1.99993e-41	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	COP9 signalosome complex subunit 2	-	-	9.576e-09	-

Source	Gene names
Sma3	At2g26990; CHLREDRAFT_189898; CSN2; FUS12; GSVIVT00023341001; Os01g0279200; OsI_01398; OsJ_01306; P0003H10.3; PHYPADRAFT_133638; PHYPADRAFT_165552; PHYPADRAFT_166775; POPTRDRAFT_558178; POPTRDRAFT_583397; RCOM_1394390; T20P8.4;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	signalosome	GO:0008180	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	cullin deneddylation	GO:0010388	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	PCI/PINT associated module	IPR013143	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26990.1	FUS12, ATCSN2, COP12, CSN2 proteasome family protein chr2:11519684-11522412 REVERSE LENGTH=439	7.00005e-41	47%
RefSeq	Arabidopsis thaliana	NP_565632.1	COP9 signalosome complex subunit 2 [Arabidopsis thaliana]	8.99998e-41	47%
RefSeq	Populus trichocarpa	XP_002330981.1	predicted protein [Populus trichocarpa]	0.0	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ67

Fln msg: your sequence is shorter than subject: 159 - 439

Fln protein: RLSKIDPFNSPETANLKNHKEIAPMASLAFAYTNNDIQQFEKILRDNKKSILGDPFIAFFMNDLMREVRTQVLLELIKPYTRIKIPFLAKELNITASEVESLLVDLILDNKIVGHIDQVQQLLHFRSGTVANVRKYAAMEKWATQLSSTTNIVVSRLN*

Protein Length: 160

Fln nts: CGCCTCTCCAAGATCGACCCCTTCAACTCGCCCGAGACGGCCAACCTGAAGAACCACAAGGAGATCGCTCCGATGGCCTCGCTGGCGTTCGCGTACACCAACAACGACATCCAGCAGTTCGAGAAGATTCTGCGCGACAACAAGAAGTCGATCCTCGGCGATCCCTTCATCGCGTTCTTCATGAACGACCTCATGCGCGAGGTCCGCACCCAGGTGCTGCTCGAGCTCATCAAGCCGTACACGCGCATCAAGATCCCCTTCTTGGCGAAGGAGCTGAACATCACGGCGTCGGAGGTCGAGTCGCTGCTCGTGGACCTCATCCTCGACAACAAGATCGTCGGCCACATCGACCAGGTGCAGCAGCTGCTGCACTTCCGCTCGGGCACCGTCGCCAACGTGCGCAAGTACGCCGCGATGGAGAAGTGGGCCACTCAGCTGAGCTCGACCACGAACATCGTCGTCAGCCGGTTGAACTGA___GCGAGTAAAGCTTGTAATTACTTACC

Fln Alignment:

Contig27176___SKIDPFNSPETANLKNHKEIAPMASLAFAYTNNDIQQFEKILRDNKKSILGDPFIAFFMNDLMREVRTQVLLELIKPYTRIKIPFLAKELNITASEVESLLVDLILDNKIVGHIDQVQQLLHFRSGTVANVRKYAAMEKWATQLSSTTNIVVSRL
B8LQ67_______________SEVNPFDGQEAKPYKNDPEILAMTNLVAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRVHGHIDQVNQLLELGDRS-KGLKKYVAIDKWNTQLRSLYQTVTNKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain