SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27097

Length: 2355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene27097
TTATCCACAATTCTCCTCTATAGATTTGCACATTTGCATTTTACAGAGGCCAGTCAAGCGTAGCCAGCTTCCTACTTCCTGAGGTTTTACGAAATTCACACTAGGGTTTAAGATCCACTGAAGTAGATCAAAGCTCTGCCATGGCAACCAACGCGGCCTTCACCTTCGCGGGGGCACTGAACCTGTTTCAGCCCACAGCTCAACCAGATGGTCTGAGGAGCAGAAAGACGGCATTTTGTCAAAGGCCGATAGGTCCTCTTCAATTTAGAGCGAAACATCGAACGAGGAGCAACAGCAGGGTCTTGGTGAGGGCGTCGGCCAAGGATATATTGTTCGATCAGGCTTCGCGTGCAGCGGTGCAGAGGGGCATTGATAAATTGGCAGATGCCGTGGGCGTTACATTGGGGCCCAGAGGGCGGAATGTTGTATTGGACGAGCTTGGAATACCGAAGGTGGTGAATGATGGAGTTACCATCGCTCGTGCCATTGAGCTTGCTGACCCCATGGAAAATGCTGGGGCGGCCTTAATCCGAGAGGTTGCAAGTAAGACGAATGACTCAGCTGGTGATGGGACAACTACGGCATCAGTTTTGGCTCGGGAGATGATCAAACTAGGTCTTATGAATGTAACAGCGGGAGCAAATCCGGTTTCCTTGAAGAAAGGAATAGACAAGACTGTGCAGAGCCTAGTCGAAGAGCTACAGAAGAACGCCAGGGCTGTAAAAGGGCGGGATGATATCAAGGCGGTGGCCACGATTTCATCTGGGAATGATGATTTTGTGGGAACTATGATTGCTGATGCAATAGATAAGGTTGGGCCAGATGGAGTTCTGTCCATTGAGTCTTCATCTTCTTTTGAAACTACAGTTGATGTTGAGGAAGGAATGGAGTTCGACAGGGGGTACATATCTCCGCAATTCGTCACAAATGCAGAGAAGTTGATTGTAGAGTTTGAAAATGCTCGAATCTTGATCACTGATCAAAAAATTTCAACCATCAAAGAGATTGTCCCTTTATTAGAAAAGACCACACAGTTGAGAGCACCTTTGGTCATAATAGCAGAAGATCTCTCGGGGGAGGCATTGGCTACTTTAGTTGTGAATAAATTGCGTGGAGTAATCAATGTTGCTGCTGTCAAGGCACCAAGCTTTGGGGAGAGAAGAAAGGCTCTTCTCCAGGATATTGCTATTCTTACAGGTGCGGAATTCATAGCTGGTGATTTGGGTATGAAGGTTGAGAATACATCAGAAGAGCAGCTTGGTATTGCCAGAAAAGTCACCATAGCGAAAGGCTCGACGACAATAATCTCTGATGCTGCCAGTAAAGATGAAATTCAAGAAAGAATTGCACAAATTAAGAAAGAGCTAGCCGAGACAGATTCTGTCTATGACACGGAAAAATTGTCAGAAAGAATTGCAAAGCTCTCAGGAGGAGTGGCAGTTATTAAGGTTGGAGCGGCTACAGAGGCCGAACTTGAGGATAAACAACTTAGGATTGAAGATGCCAAAAATGCTACCTTTGCTGCAATTCAAGAAGGAATTGTGCCAGGAGGAGGAGCAGCTTTTGTTCATTTATCCTCTTATGTGCCTGCTATAAAAGAAACCATAGAAGATCCAGATGAACGCATTGGTGCTGATATTGTACAGAAGGCCCTTATGTCTCCAGCTGCATTAATTGCAAATAATGCGGGTGTGGAAGGAGATGTCGTGGTCGAGAAAATTCTGGCGCGTGATTGGGAGATGGGATATAATGCAATGACAGACGTATACGAAAATCTACTTAATTCTGGCGTGATAGACCCTGCAAAGGTTGCAAGGTGTGCACTGCAGAATGCAGCCTCTGTTGCAGGCATGGTCCTTACAACCCAGGCCATCGTAGTTGAGAAGCCTAAAAAGCCGGTGTATGCTGCTCCTGCTCCTACTCAGGGGATGACCATTTAGATTAGCTCTCTACAATGTTGAGGTTGAAATTGAGGACTGGGCATATGTTTCTGCGGCTGTGAGACATCAAAGTTTGGTGCTCACTTCCATTGTGCAGAGGCTGCCCGATTTTGGAAGAGAGGATTATCTGAATTATTTATGAGGTGTAAAAAAAATTATAGTGATGCTAATCAAACATCCTTATTCAATCTCTTTTACAATTGATTATTCTATCGTTCCAGTTCGCACAGGAGATCAAGCATACTTTCCCTTGCAAGGTAGGGTAAAATATAGGAAACCAGGGGTTACAGGATACGTGTATTTTGATCTGAGTTTTATGTTGAACTTGAGGTGAAAAGAATTTGCTTCGTGGTGAATGTATTTTGCAATGTTACAGTTGGATCTTTCCTTTGTATTGTAAATCTTTACCCTTCGA

Ace file of the UniGene sp_v3.0_unigene27097 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RuBisCO large subunit-binding protein subunit alpha, chloroplastic n=9 Tax=fabids RepID=RUBA_PEA	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28000.1	CPN60A, CH-CPN60A, SLP chaperonin-60alpha chr2:11926603-11929184 FORWARD LENGTH=586	80%
RefSeq	Arabidopsis thaliana	NP_180367.1	chaperonin-60alpha [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002328161.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQV7

Fln msg:

Fln protein: MATNAAFTFAGALNLFQPTAQPDGLRSRKTAFCQRPIGPLQFRAKHRTRSNSRVLVRASAKDILFDQASRAAVQRGIDKLADAVGVTLGPRGRNVVLDELGIPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREMIKLGLMNVTAGANPVSLKKGIDKTVQSLVEELQKNARAVKGRDDIKAVATISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILITDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLSGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGAEFIAGDLGMKVENTSEEQLGIARKVTIAKGSTTIISDAASKDEIQERIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKETIEDPDERIGADIVQKALMSPAALIANNAGVEGDVVVEKILARDWEMGYNAMTDVYENLLNSGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKPKKPVYAAPAPTQGMTI*

Protein Length: 601

Fln nts: TTATCCACAATTCTCCTCTATAGATTTGCACATTTGCATTTTACAGAGGCCAGTCAAGCGTAGCCAGCTTCCTACTTCCTGAGGTTTTACGAAATTCACACTAGGGTTTAAGATCCACTGAAGTAGATCAAAGCTCTGCC_-_ATGGCAACCAACGCGGCCTTCACCTTCGCGGGGGCACTGAACCTGTTTCAGCCCACAGCTCAACCAGATGGTCTGAGGAGCAGAAAGACGGCATTTTGTCAAAGGCCGATAGGTCCTCTTCAATTTAGAGCGAAACATCGAACGAGGAGCAACAGCAGGGTCTTGGTGAGGGCGTCGGCCAAGGATATATTGTTCGATCAGGCTTCGCGTGCAGCGGTGCAGAGGGGCATTGATAAATTGGCAGATGCCGTGGGCGTTACATTGGGGCCCAGAGGGCGGAATGTTGTATTGGACGAGCTTGGAATACCGAAGGTGGTGAATGATGGAGTTACCATCGCTCGTGCCATTGAGCTTGCTGACCCCATGGAAAATGCTGGGGCGGCCTTAATCCGAGAGGTTGCAAGTAAGACGAATGACTCAGCTGGTGATGGGACAACTACGGCATCAGTTTTGGCTCGGGAGATGATCAAACTAGGTCTTATGAATGTAACAGCGGGAGCAAATCCGGTTTCCTTGAAGAAAGGAATAGACAAGACTGTGCAGAGCCTAGTCGAAGAGCTACAGAAGAACGCCAGGGCTGTAAAAGGGCGGGATGATATCAAGGCGGTGGCCACGATTTCATCTGGGAATGATGATTTTGTGGGAACTATGATTGCTGATGCAATAGATAAGGTTGGGCCAGATGGAGTTCTGTCCATTGAGTCTTCATCTTCTTTTGAAACTACAGTTGATGTTGAGGAAGGAATGGAGTTCGACAGGGGGTACATATCTCCGCAATTCGTCACAAATGCAGAGAAGTTGATTGTAGAGTTTGAAAATGCTCGAATCTTGATCACTGATCAAAAAATTTCAACCATCAAAGAGATTGTCCCTTTATTAGAAAAGACCACACAGTTGAGAGCACCTTTGGTCATAATAGCAGAAGATCTCTCGGGGGAGGCATTGGCTACTTTAGTTGTGAATAAATTGCGTGGAGTAATCAATGTTGCTGCTGTCAAGGCACCAAGCTTTGGGGAGAGAAGAAAGGCTCTTCTCCAGGATATTGCTATTCTTACAGGTGCGGAATTCATAGCTGGTGATTTGGGTATGAAGGTTGAGAATACATCAGAAGAGCAGCTTGGTATTGCCAGAAAAGTCACCATAGCGAAAGGCTCGACGACAATAATCTCTGATGCTGCCAGTAAAGATGAAATTCAAGAAAGAATTGCACAAATTAAGAAAGAGCTAGCCGAGACAGATTCTGTCTATGACACGGAAAAATTGTCAGAAAGAATTGCAAAGCTCTCAGGAGGAGTGGCAGTTATTAAGGTTGGAGCGGCTACAGAGGCCGAACTTGAGGATAAACAACTTAGGATTGAAGATGCCAAAAATGCTACCTTTGCTGCAATTCAAGAAGGAATTGTGCCAGGAGGAGGAGCAGCTTTTGTTCATTTATCCTCTTATGTGCCTGCTATAAAAGAAACCATAGAAGATCCAGATGAACGCATTGGTGCTGATATTGTACAGAAGGCCCTTATGTCTCCAGCTGCATTAATTGCAAATAATGCGGGTGTGGAAGGAGATGTCGTGGTCGAGAAAATTCTGGCGCGTGATTGGGAGATGGGATATAATGCAATGACAGACGTATACGAAAATCTACTTAATTCTGGCGTGATAGACCCTGCAAAGGTTGCAAGGTGTGCACTGCAGAATGCAGCCTCTGTTGCAGGCATGGTCCTTACAACCCAGGCCATCGTAGTTGAGAAGCCTAAAAAGCCGGTGTATGCTGCTCCTGCTCCTACTCAGGGGATGACCATTTAG___ATTAGCTCTCTACAATGTTGAGGTTGAAATTGAGGACTGGGCATATGTTTCTGCGGCTGTGAGACATCAAAGTTTGGTGCTCACTTCCATTGTGCAGAGGCTGCCCGATTTTGGAAGAGAGGATTATCTGAATTATTTATGAGGTGTAAAAAAAATTATAGTGATGCTAATCAAACATCCTTATTCAATCTCTTTTACAATTGATTATTCTATCGTTCCAGTTCGCACAGGAGATCAAGCATACTTTCCCTTGCAAGGTAGGGTAAAATATAGGAAACCAGGGGTTACAGGATACGTGTATTTTGATCTGAGTTTTATGTTGAACTTGAGGTGAAAAGAATTTGCTTCGTGGTGAATGTATTTTGCAATGTTACAGTTGGATCTTTCCTTTGTATTGTAAATCTTTACCCTTCGA

Fln Alignment:

Contig27097___MATNAAFTFAGALNLFQPTAQPDGLRSRKTAFCQRPIGPLQFRAKHRTRSNSRVLVRASAKDILFDQASRAAVQRGIDKLADAVGVTLGPRGRNVVLDELGIPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREMIKLGLMNVTAGANPVSLKKGIDKTVQSLVEELQKNARAVKGRDDIKAVATISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILITDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLSGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGAEFIAGDLGMKVENTSEEQLGIARKVTIAKGSTTIISDAASKDEIQERIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKETIEDPDERIGADIVQKALMSPAALIANNAGVEGDVVVEKILARDWEMGYNAMTDVYENLLNSGVIDPAKVARCALQNAASVAGMVLTTQAI
B8LQV7_______________MATNSAFTFAAALSLFQPTAQPDGLGSRKMAFCQRPIAPRQFRAKYRARSNSRVLVRASAKDILFDQDSRASVQRGIDKLADAVGVTLGPRGRNVVLDEFGMPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTAAVLAREIIKLGLMNVTAGANPVALKKGIDKTVQGLVEELQKKATPVKGRDDIKAVASISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILVTDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLTGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGADFIAGDLGMKVENTEVEQLGTARKITIAKGSTTIISDAASKDEIQARIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGATTEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKQTIEDPDERIGADIVQKALVSPAALIANNAGVEGDVVVEKILTSDWEMGYNAMTDTYENLLNSGVIDPSKVARCALQNAASVAGMVLTTQAI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
229			12	87	0.992554
231	87			12	0.992554
322	20		80		0.999996
930		12		87	0.992554
1045		10		90	0.90298
1071	14	85			0.993533
2151	10			90	0.999898
2152		9	90		0.999842
2153	9		90		0.999842
2183		76	9		1.0
2209	19		80		1.0
2274	6	93			0.999264
2276		93		6	0.999264
2307		38	44		1.0
2310		58		41	1.0
2311	47	47	5		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain