SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27091

Length: 469 nt

UniGene Fasta

>sp_v3.0_unigene27091
CGTCATGGTGGATCCTAACAAAATCAAAGCTACGATGGAATTTCCAATCCCTAATACCTTGAAGAAACTTAGAGGATTCTTAGGATTGACAAGATATTACTACGAGTTTGTCAAAAATAATGGTCAAATAGCAACACCGCTAACAAAATTATTGAAGAAGCAAGCATTTTCTTGAATTAATGAAGCAACCAAAGCTTTGAGAGAACTTAAAGGAGGCTATGTGTACAACTCTTGTGTTGGCAACACCTGACTTCACAAAAACCTTCATTGTTGAGTGTGATGCCTTAGGCCTGTTACCCACAAAAAATGGGTGACCCAATAGAAGAATTTTTCTCCTAGACATCTCTTTAGCGAATAGCTAGCGACCCATGACAACCATCGATGTAGCCGATGTATTGTGCTATTTGATCTCCACTCCTTGAATTAGTCATATGTTACCTTGCCCATTAGTTGAGAGCATATGTTTGAA

Ace file of the UniGene sp_v3.0_unigene27091

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	1.0e-19	58%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	49%

Source	Gene names
Sma3	VITISV_043911;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	1.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	1.0e-14	49%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 58 aas, putative chimeric sequence, your sequence is shorter than subject: 58 - 158

Fln protein: VMVDPNKIKATMEFPIPNTLKKLRGFLGLTRYYYEFVKNNGQIATPLTKLLKKQAFS*

Protein Length: 59

Fln nts: CGTCATGGTGGATCCTAACAAAATCAAAGCTACGATGGAATTTCCAATCCCTAATACCTTGAAGAAACTTAGAGGATTCTTAGGATTGACAAGATATTACTACGAGTTTGTCAAAAATAATGGTCAAATAGCAACACCGCTAACAAAATTATTGAAGAAGCAAGCATTTTCTTGA___ATTAATGAAGCAACCAAAGCTTTGAGAGAACTTAAAGGAGGCTATGTGTACAACTCTTGTGTTGGCAACACCTGACTTCACAAAAACCTTCATTGTTGAGTGTGATGCCTTAGGCCTGTTACCCACAAAAAATGGGTGACCCAATAGAAGAATTTTTCTCCTAGACATCTCTTTAGCGAATAGCTAGCGACCCATGACAACCATCGATGTAGCCGATGTATTGTGCTATTTGATCTCCACTCCTTGAATTAGTCATATGTTACCTTGCCCATTAGTTGAGAGCATATGTTTGAA

Fln Alignment:

Contig27091___VMVDPNKIKATMEFPIPNTLKKLRGFLGLTRYYYEFVKNNGQIATPLTKLLKKQAFS*INEATKALRELKG
P92523_______________VSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain