SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27070

Length: 1361 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27070

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport SEC13-like protein [Solanum tuberosum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30050.1	transducin family protein / WD-40 repeat family protein chr2:12825540-12826448 FORWARD LENGTH=302	72%
RefSeq	Arabidopsis thaliana	NP_180566.1	protein transport protein SEC13 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002321555.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQI2

Fln msg:

Fln protein: MSPGVKQTGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDGRVIMWREGQQENEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITVLTCREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPVQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGRVVIWTQGKEGDKWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWNQVTTVQ*

Protein Length: 310

Fln nts: AATTCTATTTCTTGGCTCGCGTACAGCTTCCCTTCCAACATTCATCTCGATGTAAATTACAGTCATAGAACTCATCAAGCAAT_-_ATGTCTCCAGGAGTGAAGCAAACGGGCAGTCAGAAGTTCGAATCCGGCCACCAAGATGTTGTCCATGACGTCACAATGGATTACTACGGGAAACGCATAGCGACCTGCTCTGCGGATCGGACTATAAAGCTTTTCGGCCTGAACGCCTCCGATACCCCAACCCTTCTGGCCTCGCTTACGGGTCACGAAGGCCCTGTCTGGCAGGTCGCTTGGGCTCACCCAAAGTTCGGGTCCATGCTCGCTTCCTGCTCATATGACGGACGCGTAATAATGTGGCGAGAGGGTCAGCAGGAGAATGAATGGTCACAGGTTCAAGTCTTCAAAGAGCACGAGGCCTCTGTGAATTCGATCTCATGGGCACCCAATGAATTGGGACTCTGCCTGGCCTGTGGTTCCTCTGACGGGTCCATAACCGTCTTGACATGCCGCGAGGATGGGTCCTGGGACAAAACGAAGATAGATCAAGCCCACCAGGTGGGCGTGACGGCAGTTTCATGGGCGCCCGCTTCCGCTCCCGGTTCCCTTGTGGGTCAGCCCTCAGATCCCGTTCAGAAGCTTGTGTCCGGTGGGTGTGATAACACAGCTAAAGTTTGGAAATTTTACAATGGTTCTTGGAAGCTAGATTGTTTTCCTCCTCTACAAATGCATACGGATTGGGTTCGGGATGTAGCTTGGGCACCCAATTTAGGTCTTCCCAAGAGCACTATCGCTAGTTGTTCCCAGGATGGGAGGGTTGTTATATGGACACAGGGTAAAGAAGGGGATAAATGGGAAGGGAAAATTTTGAATGATTTTAAGACCCCTGTCTGGAGGGTCAGCTGGTCCTTGACTGGAAACATCTTAGCTGTTGCTGATGGGAACAACAATGTGACTCTTTGGAAGGAGGCAGTGGACGGTGAGTGGAATCAGGTGACCACAGTACAGTGA___CAAATGTAAGCTTCTTTTTACGATTTTGATTTCTTGACGTTTTAATATGGTATGGTATCAAATTTGGAAGTCCTATTCGATTGTTCGCTAAATAATAAGTTTGTCTCGAAATTGGGTTATCCTATCCAACTTGTTTTGTCTGTTGTTCCATTGTTGTTGGGTTTAAACTATAAATTGTTTTCTGTTTATTGGTAATTGAATTAGGCCTTAGGTTGGCCTTTACATGGATAAATAGCTTGGAACTTACATGGATAAATAGCTTGGACCGTGAACTCCAAGAATGCATGCACATATCTATTTTTAAGAAAAGAATGTGTAGACTTGGTTTGTTCAATTATACTGGCCTCATAC

Fln Alignment:

Contig27070___MSPGVKQTGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDGRVIMWREGQQENEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITVLTCREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPVQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGRVVIWTQGKEGDKWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWNQV
A9NQI2_______________MSSGVKQMGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSILASCSYDRRVIIWQEGQQENAWSQLQVFKEHEASVNSVSWAPHELGLCLACGSSDGSITVFTRREDESWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGKVAIWTQGKEGDKWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWNQV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
695		33		66	1.0
1220	16		83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain