SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27054

Length: 1731 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27054

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Formate dehydrogenase n=1 Tax=Populus trichocarpa RepID=A9PEQ6_POPTR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G14780.1	FDH formate dehydrogenase chr5:4777043-4779190 FORWARD LENGTH=384	79%
RefSeq	Arabidopsis thaliana	NP_196982.1	Formate dehydrogenase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002320501.1	formate dehydrogenase [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV09

Fln msg:

Fln protein: MASRRAVISAFRAASRRPICSPVSSIASSVRELHAPAGSNKIVGVFYKANEYASLNPNFLGCVENALGIREWLESNGHQYIVTDDKEGPDCELEKHIPDVHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLNAAAAAGVTVAEVTGSNVVSVAEDELMRILILMRNFVPGYKQIVEGDWKVAAISYRSYDLEGKTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETKLDEMLPKCDVVVINMPLSDKTRGMFNKEKISKMKKGVLIVNNARGAIMDAQAVADASASGQIGGYSGDVWFPQPAPKDHPWRSMPNHAMTPHISGTTIDAQIRYAAGTKDMLDRYFKGEDFPSQNYIVKEGKLASQYL*

Protein Length: 390

Fln nts: CCAAACTCGTTATCAATTCGCCATTGCTACCACACTGGCTGACCACCTTCTGAGCTAGATTTCTCTTCTTTGTTCTAGTTGGTGTTTCTAGTC_-_ATGGCGAGCAGGAGAGCTGTTATATCTGCATTTCGAGCTGCGAGTAGAAGGCCAATCTGCTCCCCAGTCTCTTCTATCGCATCGTCTGTCAGAGAATTGCATGCACCTGCAGGAAGTAATAAAATTGTTGGAGTCTTTTATAAAGCCAATGAATATGCTTCACTGAATCCTAACTTTCTTGGGTGTGTTGAGAATGCTTTGGGCATACGAGAATGGCTGGAATCTAATGGTCACCAGTACATTGTGACAGATGACAAGGAAGGTCCTGACTGTGAACTTGAAAAGCACATACCTGATGTGCATGTTTTGATTTCTACGCCTTTCCACCCGGCCTATGTGACAGCAGAGAGGATCAAGAAGGCAAAGAACTTAAAGCTTCTTTTGACAGCTGGTATTGGTTCTGATCACATTGATCTAAATGCTGCAGCAGCCGCTGGTGTGACTGTTGCAGAAGTTACAGGAAGTAATGTGGTGTCCGTGGCAGAAGATGAGCTAATGCGCATTCTCATATTGATGCGAAACTTTGTGCCTGGATATAAGCAAATTGTCGAGGGTGATTGGAAAGTGGCAGCAATTTCTTACAGGTCATATGATCTAGAAGGGAAAACTATTGGTACTATTGGTGCAGGGCGTATTGGCAAAGAACTACTTAAGCGTTTGAAGCCTTTCAATTGTAAGCTTCTTTACCACGACCGTCTTTCTATTGGACCCGAATTGGAAAAGGAAACTGGAGCAACATTGGAGACAAAACTTGACGAAATGCTACCTAAATGTGATGTAGTTGTCATTAATATGCCTCTTTCTGACAAAACTAGGGGAATGTTTAACAAGGAGAAAATCAGCAAGATGAAGAAGGGTGTATTGATTGTGAACAATGCTCGAGGGGCCATCATGGATGCTCAAGCAGTTGCTGATGCTTCTGCAAGTGGACAAATTGGAGGTTACAGTGGAGATGTTTGGTTTCCTCAACCTGCTCCAAAAGATCATCCATGGCGCTCCATGCCAAACCATGCCATGACTCCCCATATCTCTGGGACTACAATAGATGCCCAGATAAGGTATGCAGCTGGAACGAAGGATATGCTAGACAGATACTTCAAGGGAGAAGATTTCCCTTCGCAGAATTACATTGTGAAGGAAGGAAAGCTGGCCAGTCAATACCTATAA___AAAATTATGTTGGATGCTAAAGCAGATGATTCATCCTGTTGAAGGCTGCTTTATCTGGAATAACAAGCAAGAGCCAGAATAGAGCTTGCTTCCCTCGAATAAAATAGTGCATCAAATATTGAATTGTCAAATACATTCCTGAGACCAATGATGCTTCAAAGCATTATGCAGGAATGAATGATAGAAGATTTGCATGAAGCTCATTCCATCTGATTTTATAGGTTAGTAGTTTTGAAATAAACTATCTCTAAAATAGAGTGAAGTCAGCGCTTTAGTCCTTTGTGGCTATTGACGCTTGAAGTTGGCTCACGGATTTAGGTAATGCTATGCATCTTTTCTACTAGCAGAGAAATGAACCTTTGTTCGTGTATGGAAGGGCAGGTTTCTGCCTTGTCTTGGTATGGTTTTCAGATAAATCTATGTTGAAGTTTCTCTTGATTATAGCCATACTCAAGTCATTGGCTTTACATT

Fln Alignment:

Contig27054___MASRRAVISAFRAASRRPICSPVSSIASSVRELHAPAGSNKIVGVFYKANEYASLNPNFLGCVENALGIREWLESNGHQYIVTDDKEGPDCELEKHIPDVHVLISTPFHPAYVTAERIXXXXXXXXXXTAGIGSDHIDLNXXXXXXXXXXXXXXSNVVSVAEDELMRILILMRNFVPGYKQIVEGDWKVAAISYRSYDLEGKTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETKLDEMLPKCDVVVINMPLSDKTRGMFNKEKISKMKKGVLIVNNARGAIMDAQAVADASASGQIGGYSGDVWFPQPAPKDHPWRSMPNHAMTPHISGTTIDAQIRYAAGTKDMLDRYFKGEDFPSQNYIVKEGKLASQYL
A9NV09_______________MASKRAVISTFRAASRKPIFSSVSPLASSVRELHAPAGSNKIVGVFYKANEYASLNPNFLGCVENALGIREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYMTAERIKKAKNLKLLLTAGIGSDHIDLNAAAAAGVTVSEVTGSNVVSVAEDELMRILILVRNFVPGYKQIVNGDWKVAAISYRSYDLEGKTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETNLDDMLPKCDVVVINMPLSDKTRGMFNKEKISKMKKGVLIVNNARGAIMDAQAVADASASGHIGGYSGDVWFPQPAPKDHPWRSMPNHAMTPHISGTTIDAQIRYAAGTKDMLDRYFRGEDFPPQHYIVKEGKLASQYL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
725			66	33	0.997452
973		80		20	0.995493
1594	1			91	1.0
1702		10		90	0.90298
1705		88		11	0.923564
1710	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain