SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27049

Length: 463 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene27049
CACCATTGCTCCGATCTGCATTGGATTCATCGTGGGCGCCAACATTCTGGCTGGCGGAGCTTTCGACGGGGCGTGCATGAACCCTGCTAGGGCCTTCGGGCCGGCGCTGGTGAGCTGGACGTGGAAAAACCACTGGATCTTCTGGGTCGGACCCCTTATCGGCTGTGGCCTCGCAGGCGCCGTCTTCGATCTGTTTTTCATCAAAGCGGAGCTCACCCACGAACGACTGCCCACGTCGGATGATGGAATTTAGATCATTTAACATTTTATTTATATAATTTTTTCGGGGTCCTTCCATCAGTGGTGTGAGGAGAAATAAATTTCCACATATTTGTGATATCAATATGTAATGCCGAGTTTGTGCACATTTCAATAAGGAGGTCTCAACGGTGTAGAAAACTCCACATTATTGAAATCTGGTTGTGGGTTTCTGCTTTGCTACGGTTTATAGACCTATCTACGA

Ace file of the UniGene sp_v3.0_unigene27049 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative tonoplast intrinsic protein (Fragment) n=1 Tax=Gossypium hirsutum RepID=Q5D893_GOSHI	-	-	4.0e-29	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Tonoplast intrinsic protein	-	-	3.82554e-43	-

Source	Gene names
Sma3	25.t00032; 26.t00032; 31.t00034; AQP; AQP.1; AQP1; AQP5; AQP6; Aqp1; At1g17810; At1g73190; At2g25810; At2g36830; At3g16240; At3g26520; At4g01470; At4g17340; At5g47450; CT179; DIP; F11O4.1; F17H15.16; F2H15.4; FCAALL.412; FavRB7; GSVIVT00000605001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	-
Sma3	urea transmembrane transporter activity	GO:0015204	Molecular Function	-
Sma3	water channel activity	GO:0015250	Molecular Function	-
Sma3	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	urea transport	GO:0015840	Biological Process	-
Sma3	water homeostasis	GO:0030104	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Archaeal flagellin, N-terminal	IPR013373	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36830.1	" GAMMA-TIP, TIP1;1, GAMMA-TIP1 gamma tonoplast intrinsic protein chr2:15445490-15446336 FORWARD LENGTH=251"	9.0e-37	71%
RefSeq	Arabidopsis thaliana	NP_181221.1	aquaporin TIP1-1 [Arabidopsis thaliana]	1.0e-36	71%
RefSeq	Populus trichocarpa	XP_002326382.1	aquaporin, MIP family, TIP subfamily [Populus trichocarpa]	1.0e-35	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP49

Fln msg: your sequence is shorter than subject: 84 - 255

Fln protein: TIAPICIGFIVGANILAGGAFDGACMNPARAFGPALVSWTWKNHWIFWVGPLIGCGLAGAVFDLFFIKAELTHERLPTSDDGI*

Protein Length: 85

Fln nts: CACCATTGCTCCGATCTGCATTGGATTCATCGTGGGCGCCAACATTCTGGCTGGCGGAGCTTTCGACGGGGCGTGCATGAACCCTGCTAGGGCCTTCGGGCCGGCGCTGGTGAGCTGGACGTGGAAAAACCACTGGATCTTCTGGGTCGGACCCCTTATCGGCTGTGGCCTCGCAGGCGCCGTCTTCGATCTGTTTTTCATCAAAGCGGAGCTCACCCACGAACGACTGCCCACGTCGGATGATGGAATTTAG___ATCATTTAACATTTTATTTATATAATTTTTTCGGGGTCCTTCCATCAGTGGTGTGAGGAGAAATAAATTTCCACATATTTGTGATATCAATATGTAATGCCGAGTTTGTGCACATTTCAATAAGGAGGTCTCAACGGTGTAGAAAACTCCACATTATTGAAATCTGGTTGTGGGTTTCTGCTTTGCTACGGTTTATAGACCTATCTACGA

Fln Alignment:

Contig27049___TIAPICIGFIVGANILAGGAFDGACMNPARAFGPALVSWTWKNHWIFWVGPLIGCGLAGAVFDLFFIKAELTHERLPTSD
A9NP49_______________TIAPICIGFIVGANILAGGAFDGACMNPARAFGPALVSWTWKNHWIFWVGPLIGGGLAGAIFEVFFIEARPTHERLPTSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain