SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27017

Length: 1745 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27017

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short-chain dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RTW7_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G06060.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:1828296-1830160 REVERSE LENGTH=326	59%
RefSeq	Arabidopsis thaliana	NP_187257.2	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002315170.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN92

Fln msg:

Fln protein: MATLSFLWLLILACPVFFVAFLWWIVQPRPVKIPIKGRHVFISGGSSGIGLALAHRAAQEGARVSILARNARRLEEAKESVESSTGQEIRIFSADVRNFEEVKKVIDEAGPVDVLICNQGVFTAQEFELQSVDTMRSMVDINLMGTIHLIKAALPHMKRSRNGPPTSIAMMSSQAGQVGVYGYTAYSSSKFALHGLAEALQQELIVHNIRVSLIFPPDTNTPGLVEENKMKPEITKLIAASSSSMEATEVAEKTLNGIKSGKFMITCNFDGFMLSIVTAGMSPQTSPIMAFVEVLAAGVVRIVALCLLWSWYSTVHKWHNHPKKYS*

Protein Length: 328

Fln nts: AATTTGATGCAGCCGTGTCCGTTTAGCTTTTAAATATAACAAAAAATTCACTAAGCTAAAATGACATAAAACCAGCGGATCTGCTTTCCAGTGTCAAAGGCACGGTTACTGATAGGGTTGTAAACTTGCAAGGTCCGTAA_-_ATGGCCACCCTCAGTTTCCTTTGGCTCCTAATACTAGCTTGCCCGGTATTCTTTGTTGCATTTTTATGGTGGATTGTGCAACCTAGACCAGTCAAAATTCCAATTAAAGGTCGCCATGTTTTCATCAGCGGAGGCTCAAGCGGAATCGGGTTAGCTTTGGCACACAGGGCGGCACAAGAGGGAGCCAGAGTTTCAATCCTGGCACGTAATGCTAGAAGGCTAGAGGAAGCTAAAGAATCTGTAGAGAGTTCTACTGGGCAAGAGATCAGGATTTTCAGTGCAGATGTGCGGAATTTCGAAGAAGTGAAGAAAGTGATTGACGAAGCGGGGCCTGTTGATGTATTGATTTGCAATCAGGGCGTTTTTACTGCTCAAGAGTTTGAACTACAGTCCGTGGATACCATGCGGTCTATGGTGGATATCAATTTGATGGGTACTATTCATTTGATCAAAGCTGCTCTTCCTCACATGAAAAGGAGCAGAAACGGACCTCCGACTTCCATTGCTATGATGTCGTCCCAGGCTGGCCAGGTGGGTGTGTATGGGTACACAGCATATTCTTCGAGTAAGTTTGCTCTACATGGTCTGGCTGAGGCATTGCAACAGGAGCTCATTGTGCATAACATCCGTGTTTCACTTATATTTCCCCCAGATACAAATACTCCTGGATTGGTGGAAGAAAACAAGATGAAACCAGAGATCACAAAACTAATAGCAGCTTCTTCCAGTTCCATGGAGGCTACAGAGGTTGCTGAAAAAACTTTAAATGGCATTAAATCAGGAAAGTTCATGATCACTTGCAACTTTGATGGTTTCATGCTTTCTATCGTAACTGCAGGGATGTCTCCACAGACATCACCTATCATGGCATTTGTTGAGGTTCTTGCTGCAGGCGTTGTACGTATTGTTGCTCTATGTCTGTTATGGAGTTGGTACAGCACCGTGCATAAATGGCACAATCATCCAAAGAAGTACTCATAG___ATGCAAGTCCTATATGTAGAGTTGCCGGTTTGCTTCGTTGAAGTAAATATGGGTATATATGTTGCATGCCTTGTATTCTTGCCATGAACAACATCTCAATTACATTGGAGGATTTGTTTGAAATTTAAATCAAATCTTATAATCGGAAGGGTCGAAAGATTCATCCACCACGAAGCCCAAGTTATATATTTTATTTGAATGCAAAAAAATAGCTCCTTAAACCTAGTAATACTCCCTTTGCCATCTATTTTATATTCTCCTTCAAAGATGATGTACGTGGAACACAAAGTGGTATGGCTATTAGTGACATGTCGGTTACGTAGCCACAATTGAGTTGTAATTCTTCTATAGATGTGAATACATCAAAGTGTAGATTGCATGCTTTTGGCTTGAGAAAAAGTTTATTATTGTTGACATTGCTTAGCGTCCACTTCACCTCTTTGGGCTTGGAGATATAGGATATTGTTTAGGAGAAGTTGAGCATGCATTCAATGTGCACACATACAAGTCATTATTTATAGGAGTGGTGTATGGCTTAATGGAATGTGTGAAGAAAATTTTGAATGTGAAGAGGATTTATGGAGATATGGTTATTATTCTATTCAATGTTGCTATAGTTGTTTG

Fln Alignment:

Contig27017___MATLSFLWLLILACPVFFVAFLWWIVQPRPVKIPIKGRHVFXXXXXXXXXLALAHRAAQEGARVSILARNARRLEEAKESVESSTGQEIRIFSADVRNFEEVKKVIDEAGPVDVLICNQGVFTAQEFELQSVDTMRSMVDINLMGTIHLIKAALPHMKRSRNGPPTSIAMMSSQAGQVGVYGYTAYSSSKFALHGLAEALQQELIVHNIRVSLIFPPDTNTPGLVEENKMKPEITKLIAASSSSMEATEVAEKTLNGIKSGKFMITCNFDGFMLSIVTAGMSPQTSPIMAFVEVLAAGVVRIVALCLLWSWYSTVHKWHNHPKK
A9NN92_______________MATHSLLWLLIISCPVLFIVFLWWIVQPRPVKVPIKGRHVFISGGSSGIGLALAHMAAQEGARVSILARNASRLEEAKESVESSTGQEIKIYSADVRNFEEVKKVMDEAGPVDVLICNQGVFTPQEFELQSVDTMRSMVDINLMGTIHLIKAALPYMKRRRNGPPASIALMSSQAGQVGVYGYTAYSSSKFALRGLAEALQQELIVHNIRVSLIFPPDTNTPGLVEENKMKPEVTKLIAASSSSMEATEVAEKTLNGIKSGKFIITCNFDGFMLSIATAGMSPQTSPIMAFVEVIAAGIVRIVALCLLWSWYSTVHKWHNHQKK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
261		12		88	1.0
1116		76		23	1.0
1131		90	10		0.90298
1135		10		90	0.90298
1181	40			60	1.0
1237		20		80	0.995493
1240			20	80	0.995493
1244	80	20			0.995493
1245	80	20			0.995493
1248			20	80	0.995493
1249	80	20			0.995493
1250	80			20	0.995493
1251	80		20		0.995493
1256	80	20			0.995493
1380			19	80	1.0
1477			23	76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain