SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26950

Length: 2410 nt

UniGene Fasta

>sp_v3.0_unigene26950
CCCATCATTTCCTGCTTCATTTCTGCGTGTAGTAGACGCACCATACCTCGCTCCTGATTTTTCCTTGCAGGAGTTCATTTGGGGGCGCTGTGGAAGAGGTTTCGACTTGGGCTAAGCTCTCAGTGTGCAGGAAATGGATTTGGTTATGCTTTTTTGCCCCCTTGGGAATAAATCTGAGAATGATTTGGAAGCGCCCTGGATCTCTGGGATCATTATGAGCAAATCAACGGATACACTGCCATTGAAAATCAATTAGCGGCTGGCGCAGATCTCTCAATCCATGTTGTATTTGACACGTCTGTAACATGGCTGGCATAGGAGGTTAAAATTTACAGCTGTTTCATGGCTCTTAACGATAAGAAGGAAATGTGTGTCCCCAACAAACATTCATGGCATCATGAGCTTATATCGAGTAACCGTAAATTTACTAGAAGAAATTTAAGTGCCGCATATGGAATGGCACTGACGCTTAATCAGTTTGACATTAAAAGATCTTTAGTGATACAAAGGGGAATAACACATTTCTCAGTATTCGTTAAACCGTGGTCCTGTAAAATTCCTATGAGCGAGGGATTTTTTGAACCTCTTTGAAACTCATCTGCTACCGCTGATAGTGAGTTACTAACATTGGTTAATTTTATTGGGGAGAGGGGCAGCTGATGTATGGTAAAGTAAGACCTTATATAAATATTCCCATTCAGGAGTTCTTTGTCTATGATGAAGGTTCACAATGTTGGGTGAATGACTCCACTGATCTGTGCTAACCAAACAACCCTTGCAATTTGTTGTTTCCCCTTTAAAGAATGATTCGGTCATAAGTTGGATGCCAGGAACACTCATCTGTATGGTCTCTTTGTGATGAGTTAAGAAACATTGCAAAAATGTTGCAATCGGCTACAACCTGCAAACTATTGAAGACAAAACCTAAAAGCCATGCCACTGGAATTTATATCAGCTCTTCCCTGCGCCAAAAATCATTACCAACAAATGCCATGACGTGTAATATTGAGCCTGAATCTGCTCTTTTGCCAGGGCTACCGGATGATGTTGCTAAGCATTGTCTGGCACTCGTACCGCGCATTTATTTCCAGTCTTTGGGGTCCGTTTGTAAACTATGGAGGAAATTCCTTCAAAGCAAAGAATTCTATGTGGTGAGAAAACTGGCAGGTACCGTGGAAGAATGGATTTATGTACTGACAACTGACGCAGATACTGAAAAAACCCATTGGCAGGTTCTTAACTCTGTTCATGGTAAATGGCAATCACTTCCACCAATGCCTGGTCCCATGAAGACAGGATTCGGTTATGTTGTGATTGATAGGAAACTTTTGGTCATGGCTGGTTTGTTTGATGATGATTATGGTACTGCTAAGGCTTCAGCAAACGTTTATATGTATGACTCTGCATTGAACAGGTGGAGTGAGCTTCCAAACATGAAGGTAGCACGCTATGACTTTGCTTGTGCAGAGGTTAATGGCCTTGTTTATGTGGTTGGTGGTCATGGAGAAAGAGGTGAAAACCTTTCTAGTGTTGAGGTTTTTGACCCCAAAACAAATGAGTGGACCATGGTTGAGAGTCTAAGAAGGCCCAGGTGGGGTTGTTTTGCTTGTTGTCTTGAAGGAAGGTTATATGTCATGGGTGGACGTTCAAGCTTCACCATAGGACATTCAAGGTGTATTGATGTTTATGATCCTGAAATCCATACTTGGAAAGAAATGAAAAATGGGTGTGTTATGGTTGTTGCTCATGCTGTTCTGGACAAGAAGCTTTTCTGTATAGAATGGAAGAATGAAAGGAAGTTGGCAGTTTTCAATGTTGTGGACAACTCATGGCAAAGAGTCCCTTTGCCACTGACTGGGAGCATAACTGTTGGCTTTCGCTTTGGCATCCTGAATGGGAATCTGCTGCTCTTCTCCACCAAATATGAACCCTTATTTAAAACGCTAGTATATGATCCAAATGCTATGCCAGGTTTAGAGTGGCGAACAATCGATATTAAACCATTAGGAAATTGTATATGCAGTGCTACAATTACTGCATAAAGGTTTAGTTGTTTCTTTGATTACCAAGTTGTCAAGGACAAAGCTTAGAACAATTGGTTTGATTTATCCATAATTGCCTATGGCCAAGTAGGGAATACCGACACTGCTCTCTTATTTAACGCATGGTATGGAACACTGTATTAGTCTATTTAGACATATGGTCCTATTCAATAATAGAAGGATATGATTTTTCTCATCCTTTGTGTGAGATGACATTTGCTTTTGATTTGCCAAGTTATGCTTACACCTGTCTTTGCCTTTATTTGAAAGACTGTGACAGAACACAGATGCTGAAAGATGAGATAGCTATTTGTTTTAAGATGGTATTGTATACACCAGTAATTATCAAAACATCGCCTTCTTAACCG

Ace file of the UniGene sp_v3.0_unigene26950

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/kelch-repeat protein [Arabidopsis thaliana] ref\|NP_001077785.1\| F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|Q9CAG8.1\|FBK28_ARATH RecName: Full=F-box/kelch-repeat protein At1g67480 gb\|AAG52295.1\|AC011020_2 unknown protein [Arabidopsis thalia	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67480.1	Galactose oxidase/kelch repeat superfamily protein chr1:25277294-25278529 FORWARD LENGTH=376	59%
RefSeq	Arabidopsis thaliana	NP_176915.1	F-box/kelch-repeat protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002327284.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX50

Fln msg:

Fln protein: MLQSATTCKLLKTKPKSHATGIYISSSLRQKSLPTNAMTCNIEPESALLPGLPDDVAKHCLALVPRIYFQSLGSVCKLWRKFLQSKEFYVVRKLAGTVEEWIYVLTTDADTEKTHWQVLNSVHGKWQSLPPMPGPMKTGFGYVVIDRKLLVMAGLFDDDYGTAKASANVYMYDSALNRWSELPNMKVARYDFACAEVNGLVYVVGGHGERGENLSSVEVFDPKTNEWTMVESLRRPRWGCFACCLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWKEMKNGCVMVVAHAVLDKKLFCIEWKNERKLAVFNVVDNSWQRVPLPLTGSITVGFRFGILNGNLLLFSTKYEPLFKTLVYDPNAMPGLEWRTIDIKPLGNCICSATITA*

Protein Length: 388

Fln nts: CCCATCATTTCCTGCTTCATTTCTGCGTGTAGTAGACGCACCATACCTCGCTCCTGATTTTTCCTTGCAGGAGTTCATTTGGGGGCGCTGTGGAAGAGGTTTCGACTTGGGCTAAGCTCTCAGTGTGCAGGAAATGGATTTGGTTATGCTTTTTTGCCCCCTTGGGAATAAATCTGAGAATGATTTGGAAGCGCCCTGGATCTCTGGGATCATTATGAGCAAATCAACGGATACACTGCCATTGAAAATCAATTAGCGGCTGGCGCAGATCTCTCAATCCATGTTGTATTTGACACGTCTGTAACATGGCTGGCATAGGAGGTTAAAATTTACAGCTGTTTCATGGCTCTTAACGATAAGAAGGAAATGTGTGTCCCCAACAAACATTCATGGCATCATGAGCTTATATCGAGTAACCGTAAATTTACTAGAAGAAATTTAAGTGCCGCATATGGAATGGCACTGACGCTTAATCAGTTTGACATTAAAAGATCTTTAGTGATACAAAGGGGAATAACACATTTCTCAGTATTCGTTAAACCGTGGTCCTGTAAAATTCCTATGAGCGAGGGATTTTTTGAACCTCTTTGAAACTCATCTGCTACCGCTGATAGTGAGTTACTAACATTGGTTAATTTTATTGGGGAGAGGGGCAGCTGATGTATGGTAAAGTAAGACCTTATATAAATATTCCCATTCAGGAGTTCTTTGTCTATGATGAAGGTTCACAATGTTGGGTGAATGACTCCACTGATCTGTGCTAACCAAACAACCCTTGCAATTTGTTGTTTCCCCTTTAAAGAATGATTCGGTCATAAGTTGGATGCCAGGAACACTCATCTGTATGGTCTCTTTGTGATGAGTTAAGAAACATTGCAAAA_-_ATGTTGCAATCGGCTACAACCTGCAAACTATTGAAGACAAAACCTAAAAGCCATGCCACTGGAATTTATATCAGCTCTTCCCTGCGCCAAAAATCATTACCAACAAATGCCATGACGTGTAATATTGAGCCTGAATCTGCTCTTTTGCCAGGGCTACCGGATGATGTTGCTAAGCATTGTCTGGCACTCGTACCGCGCATTTATTTCCAGTCTTTGGGGTCCGTTTGTAAACTATGGAGGAAATTCCTTCAAAGCAAAGAATTCTATGTGGTGAGAAAACTGGCAGGTACCGTGGAAGAATGGATTTATGTACTGACAACTGACGCAGATACTGAAAAAACCCATTGGCAGGTTCTTAACTCTGTTCATGGTAAATGGCAATCACTTCCACCAATGCCTGGTCCCATGAAGACAGGATTCGGTTATGTTGTGATTGATAGGAAACTTTTGGTCATGGCTGGTTTGTTTGATGATGATTATGGTACTGCTAAGGCTTCAGCAAACGTTTATATGTATGACTCTGCATTGAACAGGTGGAGTGAGCTTCCAAACATGAAGGTAGCACGCTATGACTTTGCTTGTGCAGAGGTTAATGGCCTTGTTTATGTGGTTGGTGGTCATGGAGAAAGAGGTGAAAACCTTTCTAGTGTTGAGGTTTTTGACCCCAAAACAAATGAGTGGACCATGGTTGAGAGTCTAAGAAGGCCCAGGTGGGGTTGTTTTGCTTGTTGTCTTGAAGGAAGGTTATATGTCATGGGTGGACGTTCAAGCTTCACCATAGGACATTCAAGGTGTATTGATGTTTATGATCCTGAAATCCATACTTGGAAAGAAATGAAAAATGGGTGTGTTATGGTTGTTGCTCATGCTGTTCTGGACAAGAAGCTTTTCTGTATAGAATGGAAGAATGAAAGGAAGTTGGCAGTTTTCAATGTTGTGGACAACTCATGGCAAAGAGTCCCTTTGCCACTGACTGGGAGCATAACTGTTGGCTTTCGCTTTGGCATCCTGAATGGGAATCTGCTGCTCTTCTCCACCAAATATGAACCCTTATTTAAAACGCTAGTATATGATCCAAATGCTATGCCAGGTTTAGAGTGGCGAACAATCGATATTAAACCATTAGGAAATTGTATATGCAGTGCTACAATTACTGCATAA___AGGTTTAGTTGTTTCTTTGATTACCAAGTTGTCAAGGACAAAGCTTAGAACAATTGGTTTGATTTATCCATAATTGCCTATGGCCAAGTAGGGAATACCGACACTGCTCTCTTATTTAACGCATGGTATGGAACACTGTATTAGTCTATTTAGACATATGGTCCTATTCAATAATAGAAGGATATGATTTTTCTCATCCTTTGTGTGAGATGACATTTGCTTTTGATTTGCCAAGTTATGCTTACACCTGTCTTTGCCTTTATTTGAAAGACTGTGACAGAACACAGATGCTGAAAGATGAGATAGCTATTTGTTTTAAGATGGTATTGTATACACCAGTAATTATCAAAACATCGCCTTCTTAACCG

Fln Alignment:

Contig26950___MLQSATTCKLLKTKPKSHATGIYISSSLRQKSLPTNAMTCNIEPESALLPGLPDDVAKHCLALVPRIYFQSLGSVCKLWRKFLQSKEFYVVRKLAGTVEEWIYVLTTDADTEKTHWQVLNSVHGKWQSLPPMPGPMKTGFGYVVIDRKLLVMAGLFDDDYGTAKASANVYMYDSALNRWSELPNMKVARYDFACAEVNGLVYVVGGHGERGENLSSVEVFDPKTNEWTMVESLRRPRWGCFACCLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWKEMKNGCVMVVAHAVLDKKLFCIEWKNERKLAVFNVVDNSWQRVPLPLTGSITVGFRFGILNGNLLLFSTKYEPLFKTLVYDPNAMPGLEWRTIDIKPLGNCICSATITA
A9NX50_______________MMQVATTCEVLKTKPRIHATGIYISSSMRQQSLPTNAMPCNNEPESALLPGLPDDVAKHCLALVPRIHFQSLGSVCKPWRKFLQSKEFHVVRKLAGTVEEWIYVLTTDADTERTHWQVLNSVQGKWQSLPPMPGPMKTGFGYVVIDGKLLVMAGLFEDDSGTAKASANVYMYDSALNRWSELPNMKVARYGFACAEVNGLVYAVGGHGERDENLSSVEVFDPKTNEWTMVESLRRPRWGCFACGLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWAEMKNGCVMAVAHAVLDKKLFCMEWKNERKLAVFNVVDNSWQRVPLPLTGSVTVGFCFGILNGNLLLFPTKMEPLCKTLVYDPNAMPGLEWQAIDIRPLGICICTVTITA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
996	66		33		0.997452
997		66	33		0.997452
1068	20	80			0.995493
1105	14			85	0.993533
1106	14			85	0.993533
1322		10	90		0.90298
1327		11		88	0.923564
1328	11			88	0.923564
1359		11		88	0.923564
1362			88	11	0.923564
1885			92	7	0.999664
1888		7		92	0.999602
2123	42			7	1.0
2237	14	78		7	0.999974
2238		21	7	71	1.0
2239	11	88			0.923564
2240	75	25			1.0
2334			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain