SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26914

Length: 568 nt

UniGene Fasta

>sp_v3.0_unigene26914
ATTCTCGACAATCTCTACTACGACGGCGTTATAAAGAATCGCGGCTTGTTTACCTCTGACACAACGCTCTTGACAAATGCAAACACCAGGAATTTGGTTTTTGCAAACTCCGGGGCATTTAACATGTGCACATGGCAGCAAAACTTTGCTGCTGCGATGGTCAAAATGGGAAAGATTGAGGTATTGACTGGCAACCAGGGAGAAATCCGCGTGAACTGCAGGGTTGTCAACAAGTAATTCATCGAGATAGTCCCATTAGAAATGCCTGAGTACTTATCCACGGACCAGTAAATGCATCAATAAATGTGCGTAATCCCCAATAACAAGGGTTACATGGTCTCCAAATTTGGAATTATTGTACTGCAACAATAAAGAGACCAATGCCATTCTTTCAAGGGATTGTTCAACATAGTGCCCAAATTAAGAATTATTGCACTGCGCCCTAATAGAAACTAATCTCATTGTCTGAATGGAATATGCAGTGAATGATAAAAGCAAAGCAAATTTGTTAATTATATAAGCGCTCCTCCAGCATTATCCAAATTAAGAATTATTGCACTGCGCCACG

Ace file of the UniGene sp_v3.0_unigene26914

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Royal Palm Tree Peroxidase n=1 Tax=Roystonea regia RepID=D1MPT2_ROYRE	-	-	6.0e-13	54%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	45%
Sma3	Putative peroxidase	-	-	5.652e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	4.562e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	4.562e-12	%
Sma3	Methane metabolism	00680	4.562e-12	%
Sma3	Phenylpropanoid biosynthesis	00940	4.562e-12	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.562e-12	%
Sma3	Metabolic pathways	01100	4.562e-12	%
Sma3	Biosynthesis of secondary metabolites	01110	4.562e-12	%

Source	Gene names
Sma3	B1135C02.24-1; B1135C02.24-2; B1135C02.31; B1135C02.47; GSVIVT00022537001; GSVIVT00037159001; OSJNBa0034O12.19; OSJNBb0099P06.2; Os01g0326000; Os01g0326300; Os01g0327400; Os05g0162000; OsI_01672; OsI_01675; OsI_01676; OsI_01677; OsI_01682; OsI_18569; OsJ_

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002335150.1	predicted protein, partial [Populus trichocarpa]	5.0e-17	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5W5I4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 79 - 353

Fln protein: ILDNLYYDGVIKNRGLFTSDTTLLTNANTRNLVFANSGAFNMCTWQQNFAAAMVKMGKIEVLTGNQGEIRVNCRVVNK*

Protein Length: 80

Fln nts: ATTCTCGACAATCTCTACTACGACGGCGTTATAAAGAATCGCGGCTTGTTTACCTCTGACACAACGCTCTTGACAAATGCAAACACCAGGAATTTGGTTTTTGCAAACTCCGGGGCATTTAACATGTGCACATGGCAGCAAAACTTTGCTGCTGCGATGGTCAAAATGGGAAAGATTGAGGTATTGACTGGCAACCAGGGAGAAATCCGCGTGAACTGCAGGGTTGTCAACAAGTAA___TTCATCGAGATAGTCCCATTAGAAATGCCTGAGTACTTATCCACGGACCAGTAAATGCATCAATAAATGTGCGTAATCCCCAATAACAAGGGTTACATGGTCTCCAAATTTGGAATTATTGTACTGCAACAATAAAGAGACCAATGCCATTCTTTCAAGGGATTGTTCAACATAGTGCCCAAATTAAGAATTATTGCACTGCGCCCTAATAGAAACTAATCTCATTGTCTGAATGGAATATGCAGTGAATGATAAAAGCAAAGCAAATTTGTTAATTATATAAGCGCTCCTCCAGCATTATCCAAATTAAGAATTATTGCACTGCGCCACG

Fln Alignment:

Contig26914___ILDNLYYDGVIKNRGLFTSDXXXXXXXXXXXXVFANSGAFNMCTWQQNFAAAMVKMGKIEVLTGNQGEIRVNCRVVN
Q5W5I4_______________VFDNKYYVDLMNRQGLFTSDQDLYSDSRTKAIV--NDFALDQDLFFEKFAVAMVKMGQLNVLTGSKGEIRSNCSVSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain