SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26908

Length: 2646 nt

UniGene Fasta

>sp_v3.0_unigene26908
AGTGGGGATGTGTTTGGTATAAAAGAGTGGGAGGAGCTCAGGCCAGGGAAGCGGCCAGAGCTAAAGTTGGGAGTTCCACTACCAGACCATTAATTCAAGATTCATCCCACCTCAGCCTGGAAATTTGGTCTGAATCTGGAGCTCAATACTGCACAAGTACCTTTGGTCTCTTCGGGAATCGTGTTTGGAAGAAGAAATTGAGATCCGGCCAAAGATGGTTGCAGGGGCAGACCTGGGCGCTGTGGAGGCCAATGGAAATCAAAATGGAAATGGATTTCATCATGTGCATTCTGTTGATCTCTGCATTCAGAATGGACCAGACCCTCTGAATTGGGGGCAGGCTGCCAAGGCCCTGCAGGGCTCCCACTTTGAAGAAGTGAAGCTCATGGTGGAGTCCTATTTCGGATGCGAGGAAGTTTCCATTGAAGGCAAATCGCTCACAATCGCGGATGTAACCGCAGTTGCCAGGAGACCAGAGGCCAAGGTGAGATTAGATGCAGTGTCAGCGAAGGCACGGGTGGATGAAAGCTCTAACTGGGTTCTGCAAAACATGCTCAAGGGCACTGATACATACGGTGTGACGACAGGCTTCGGAGCCACTTCGCACAGACGAACGAACCAGGGGGCCGAGCTGCAGAAGGAGCTCATCAGGTTCTTGAATTCGGGAGTCCTGACAGAGGGCAACATTCTGCCGCAAGAAACGACCCGGGCAGCCATGCTGGTGCGCACAAATACTCTGATGCAGGGGTACTCTGGAATCCGGTGGGAGATTCTGGAAACAATCCAGAAACTACTGAATGCGGGAATTATTCCGAAATTGCCTGTGAAGGGCACCATTTCATCCTCGGGCGACCTGGTACCGTTGTCCTACATTGCAGGTTTCATAACAGGGCGACCCAATTCGAGAGCCAGATGCATAGACGGTAAGGAACTCGGTGCTCTGGAAGCGCTTCAGCAAATCGGAGTCGAGAAGCCCTTTGAGCTCCAGCCCAAGGAAGGATTAGCCATCGTTAACGGGACCTCGGTCGGAGCTGCTCTGGCTTCCATCGTTTGCTTCGATGCCAACATTATCTGCATTGCTGCAGAAGTTCTGTCCGCCATGTTCTGCGAAGTGATGCTCGGGAAACCAGAGTTCACAGACCCATTGACACACAGGCTGAAGCACCATCCTGCCCAAATGGAAGCCGCGGCCATAATGGAATATGTTCTGGATGGGAGCTCCTACATGAAAAATGCCGCAAAAAAGCACGAGATGAATCCCCTGCAGAAGCCGAAGCAGGATCGTTATGCTCTCAGAACCTCGCCACAGTGGCTCGGTCCCCAAATCGAAGTCATCAGATCCGCTACCCACATGATCCAGCGAGAGATTAACTCTGTCAATGACAACCCTGTAATTGATGTTGCTCGAGACAAAGCACTGCACGGCGGGAACTTCCAGGGGACCCCAATCGGTGTCTCCATGGACAACCTGCGCCTCGCTCTCGCCGCAATCGGGAAGCTAATGTTCGCCCAATTCTCGGAGCTCGTCAACGATTACTACAACGGTGGCCTGCCTTCGAATCTCAGCGGTGGCCCCAACCCGAGCCTCGACTACGGCTTCAAGGGCGCCGAGATAGCCATGGCTTCCTACACATCGGAGCTTCTGTACCTCGCCAGCCCTGTCACCACCCACGTCCAGAGCGCCGAGCAGCACAACCAAGATGTCAATTCTCTGGGCCTCATCTCAGCCCGCAAATCAGCCGAGGCAATCGACATACTCAATCTCATGGTCTCCACGTATTTGCTCGCGCTCTGTCAGGCCGCGGATTTGCGACACCTGGAAGAAAACATGCTGAGCACCGTGAAGCACGTGGTCTCCCACGTGGCCAAGAAAACACTGAGCACGCACAACGGGGAGCTTCTCACCGCCGGGCGCTTCTGCGAAAAAGACCTCCTCCAGGCCGTCGAGAACCTCCACGTCTTCGCCTACGTGGACGACCCCTGCAACGAGAACTACCCATTGATGCAACAGCTCAGACAAGTTCTCGTTGCCCACGCTCTGACCGAGACTGCCCAAATTCAAACTCAAACCCAGTCCTCCATTTTCAACAAGATTCCCGCCTTCGAGAAAGAATTGAAAGACCAAATGGAAGCAGAAATAGGGCGCGCTCGCCAGGACTACTACGAAAGGGGGGTCGCGGGTTCGATTCCCAACAGAATCCAGGAATGCAGATCCTTTCCTCTCTACGACTTCGCGAGATCGCAGCTCGGCACCCAGCTCCTTTCCGGCGACCGGGTAACTTCTCCGGGCGAATATATTGAAAAGGTTTACACCGGAATCCGTGACGGCAAGATTATTTCGCCCCTCTTCAAGTGCCTGGACGGATGGTCTGGAACTCCCGGGCCATTTCACAGTTAAATTCCTGAACCATCATCCTGTTATATATAGTTTGCAAATTGAATAAATGGAGTAATATATTAAGCATTGGAAACGGCAGGAGCACCTGCAGCACGTTTTGCATAGAATGTAGTATGAACACAGGTCGCGCCTGGCCAGTTTAATGCTGTGTATAGTCATTTTTGAATTCAAAATCTGAATTGTGTGTGGATTACAATTTGGCAAACCGATTTTCGCCGGTGTTGGGAAATATTATATAATTTTTAATC

Ace file of the UniGene sp_v3.0_unigene26908

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phenylalanine ammonia-lyase n=2 Tax=Pinus pinaster RepID=Q7XJC3_PINPS	-	-	0.0	97%
FL-Next	sp=Phenylalanine ammonia-lyase; Pinus pinaster (Maritime pine).	-	-	0.0	99%

Source	ECs	Term	Type	e value	Identity
Sma3	Phenylalanine ammonia-lyase.	EC:4.3.1.24	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Nitrogen metabolism	00910	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	pal1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ammonia ligase activity	GO:0016211	Molecular Function	-
Sma3	ammonia-lyase activity	GO:0016841	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	L-phenylalanine catabolic process	GO:0006559	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aromatic amino acid lyase	IPR001106	-	0.0	-
Sma3	Phenylalanine ammonia-lyase	IPR005922	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10340.1	PAL4 phenylalanine ammonia-lyase 4 chr3:3204260-3207809 FORWARD LENGTH=707	64%
RefSeq	Arabidopsis thaliana	NP_187645.1	phenylalanine ammonia-lyase 4 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002315308.1	phenylalanine amonnia lyase [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7XJC4

Fln msg:

Fln protein: MVAGADLGAVEANGNQNGNGFHHVHSVDLCIQNGPDPLNWGQAAKALQGSHFEEVKLMVESYFGCEEVSIEGKSLTIADVTAVARRPEAKVRLDAVSAKARVDESSNWVLQNMLKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNSGVLTEGNILPQETTRAAMLVRTNTLMQGYSGIRWEILETIQKLLNAGIIPKLPVKGTISSSGDLVPLSYIAGFITGRPNSRARCIDGKELGALEALQQIGVEKPFELQPKEGLAIVNGTSVGAALASIVCFDANIICIAAEVLSAMFCEVMLGKPEFTDPLTHRLKHHPAQMEAAAIMEYVLDGSSYMKNAAKKHEMNPLQKPKQDRYALRTSPQWLGPQIEVIRSATHMIQREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLALAAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMASYTSELLYLASPVTTHVQSAEQHNQDVNSLGLISARKSAEAIDILNLMVSTYLLALCQAADLRHLEENMLSTVKHVVSHVAKKTLSTHNGELLTAGRFCEKDLLQAVENLHVFAYVDDPCNENYPLMQQLRQVLVAHALTETAQIQTQTQSSIFNKIPAFEKELKDQMEAEIGRARQDYYERGVAGSIPNRIQECRSFPLYDFARSQLGTQLLSGDRVTSPGEYIEKVYTGIRDGKIISPLFKCLDGWSGTPGPFHS*

Protein Length: 729

Fln nts: AGTGGGGATGTGTTTGGTATAAAAGAGTGGGAGGAGCTCAGGCCAGGGAAGCGGCCAGAGCTAAAGTTGGGAGTTCCACTACCAGACCATTAATTCAAGATTCATCCCACCTCAGCCTGGAAATTTGGTCTGAATCTGGAGCTCAATACTGCACAAGTACCTTTGGTCTCTTCGGGAATCGTGTTTGGAAGAAGAAATTGAGATCCGGCCAAAG_-_ATGGTTGCAGGGGCAGACCTGGGCGCTGTGGAGGCCAATGGAAATCAAAATGGAAATGGATTTCATCATGTGCATTCTGTTGATCTCTGCATTCAGAATGGACCAGACCCTCTGAATTGGGGGCAGGCTGCCAAGGCCCTGCAGGGCTCCCACTTTGAAGAAGTGAAGCTCATGGTGGAGTCCTATTTCGGATGCGAGGAAGTTTCCATTGAAGGCAAATCGCTCACAATCGCGGATGTAACCGCAGTTGCCAGGAGACCAGAGGCCAAGGTGAGATTAGATGCAGTGTCAGCGAAGGCACGGGTGGATGAAAGCTCTAACTGGGTTCTGCAAAACATGCTCAAGGGCACTGATACATACGGTGTGACGACAGGCTTCGGAGCCACTTCGCACAGACGAACGAACCAGGGGGCCGAGCTGCAGAAGGAGCTCATCAGGTTCTTGAATTCGGGAGTCCTGACAGAGGGCAACATTCTGCCGCAAGAAACGACCCGGGCAGCCATGCTGGTGCGCACAAATACTCTGATGCAGGGGTACTCTGGAATCCGGTGGGAGATTCTGGAAACAATCCAGAAACTACTGAATGCGGGAATTATTCCGAAATTGCCTGTGAAGGGCACCATTTCATCCTCGGGCGACCTGGTACCGTTGTCCTACATTGCAGGTTTCATAACAGGGCGACCCAATTCGAGAGCCAGATGCATAGACGGTAAGGAACTCGGTGCTCTGGAAGCGCTTCAGCAAATCGGAGTCGAGAAGCCCTTTGAGCTCCAGCCCAAGGAAGGATTAGCCATCGTTAACGGGACCTCGGTCGGAGCTGCTCTGGCTTCCATCGTTTGCTTCGATGCCAACATTATCTGCATTGCTGCAGAAGTTCTGTCCGCCATGTTCTGCGAAGTGATGCTCGGGAAACCAGAGTTCACAGACCCATTGACACACAGGCTGAAGCACCATCCTGCCCAAATGGAAGCCGCGGCCATAATGGAATATGTTCTGGATGGGAGCTCCTACATGAAAAATGCCGCAAAAAAGCACGAGATGAATCCCCTGCAGAAGCCGAAGCAGGATCGTTATGCTCTCAGAACCTCGCCACAGTGGCTCGGTCCCCAAATCGAAGTCATCAGATCCGCTACCCACATGATCCAGCGAGAGATTAACTCTGTCAATGACAACCCTGTAATTGATGTTGCTCGAGACAAAGCACTGCACGGCGGGAACTTCCAGGGGACCCCAATCGGTGTCTCCATGGACAACCTGCGCCTCGCTCTCGCCGCAATCGGGAAGCTAATGTTCGCCCAATTCTCGGAGCTCGTCAACGATTACTACAACGGTGGCCTGCCTTCGAATCTCAGCGGTGGCCCCAACCCGAGCCTCGACTACGGCTTCAAGGGCGCCGAGATAGCCATGGCTTCCTACACATCGGAGCTTCTGTACCTCGCCAGCCCTGTCACCACCCACGTCCAGAGCGCCGAGCAGCACAACCAAGATGTCAATTCTCTGGGCCTCATCTCAGCCCGCAAATCAGCCGAGGCAATCGACATACTCAATCTCATGGTCTCCACGTATTTGCTCGCGCTCTGTCAGGCCGCGGATTTGCGACACCTGGAAGAAAACATGCTGAGCACCGTGAAGCACGTGGTCTCCCACGTGGCCAAGAAAACACTGAGCACGCACAACGGGGAGCTTCTCACCGCCGGGCGCTTCTGCGAAAAAGACCTCCTCCAGGCCGTCGAGAACCTCCACGTCTTCGCCTACGTGGACGACCCCTGCAACGAGAACTACCCATTGATGCAACAGCTCAGACAAGTTCTCGTTGCCCACGCTCTGACCGAGACTGCCCAAATTCAAACTCAAACCCAGTCCTCCATTTTCAACAAGATTCCCGCCTTCGAGAAAGAATTGAAAGACCAAATGGAAGCAGAAATAGGGCGCGCTCGCCAGGACTACTACGAAAGGGGGGTCGCGGGTTCGATTCCCAACAGAATCCAGGAATGCAGATCCTTTCCTCTCTACGACTTCGCGAGATCGCAGCTCGGCACCCAGCTCCTTTCCGGCGACCGGGTAACTTCTCCGGGCGAATATATTGAAAAGGTTTACACCGGAATCCGTGACGGCAAGATTATTTCGCCCCTCTTCAAGTGCCTGGACGGATGGTCTGGAACTCCCGGGCCATTTCACAGTTAA___ATTCCTGAACCATCATCCTGTTATATATAGTTTGCAAATTGAATAAATGGAGTAATATATTAAGCATTGGAAACGGCAGGAGCACCTGCAGCACGTTTTGCATAGAATGTAGTATGAACACAGGTCGCGCCTGGCCAGTTTAATGCTGTGTATAGTCATTTTTGAATTCAAAATCTGAATTGTGTGTGGATTACAATTTGGCAAACCGATTTTCGCCGGTGTTGGGAAATATTATATAATTTTTAATC

Fln Alignment:

Contig26908___MVAGADLGAVEANGNQNGNGFHHVHSVDLCIQNGPDPLNWGQAAKALQGSHFEEVKLMVESYFGCEEVSIEGKSLTIADVTAVARRPEAKVRLDAVSAKARVDESSNWVLQNMLKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNSGVLTEGNILPQETTRAAMLVRTNTLMQGYSGIRWEILETIQKLLNAGIIPKLPVKGTISSSGDLVPLSYIAGFITGRPNSRARCIDGKELGALEALQQIGVEKPFELQPKEGLAIVNGTSVGAALASIVCFDANIICIAAEVLSAMFCEVMLGKPEFTDPLTHRLKHHPAQMEAAAIMEYVLDGSSYMKNAAKKHEMNPLQKPKQDRYALRTSPQWLGPQIEVIRSATHMIQREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLALAAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMASYTSELLYLASPVTTHVQSAEQHNQDVNSLGLISARKSAEAIDILNLMVSTYLLALCQAADLRHLEENMLSTVKHVVSHVAKKTLSTHNGELLTAGRFCEKDLLQAVENLHVFAYVDDPCNENYPLMQQLRQVLVAHALTETAXXXXXXXXXXFNKIPAFEKELKDQMEAEIGRARQDYYERGVAGSIPNRIQECRSFPLYDFARSQLGTQLLSGDRVTSPGEYIEKVYTGIRDGKIISPLFKCLDGWSGTPGPFHS
Q7XJC4_______________MVAGADLGAVEANGNQNGNGFHHVHSVDLCIQNGPDPLNWGQAAKALQGSHFEEVKLMVESYFGCEEVSIEGKSLTIADVTAVARRPEAKVRLDAVSAKARVDESSNWVLQNMLKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNSGVLTEGNILPQETTRAAMLVRTNTLMQGYSGIRWEILETIQKLLNAGIIPKLPVKGTISSSGDLVPLSYIAGFITGRPNSRARCIDGKELGALEALQQIGVEKPFELQPKEGLAIVTGPRLGAALASIVCFDANIICIAAEVLSAMFCEVMLGKPEFTDPLTHRLKHHPAQMEAAAIMEYVLDGSSYMKNAAKKHEMNPLQKPKQDRYALRTSPQWLGPQIEVIRSATHMIQREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLALAAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMASYTSELLYLASPVTTHVQSAEQHNQDVNSLGLISARKSAEAIDILNLMVSTYLLALCQAADLRHLEENMLSTVKHVVSHVAKKTLSTHNGELLTAGRFCEKDLLQAVENLHVFAYVDDPCNENYPLMQQLRQVLVAHALTETAQIQTQTQSSIFNKIPAFEKELKDQMEAEIGRARQDYYERGVAGSIPNRIQECRSFPLYDFARSQLGTQLLSGDRVTSPGEYIEKVYTGIRDGKIISPLFKCLDGWSGTPGPFHS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
282	10			90	0.90298
327		10		90	0.90298
363		90		10	0.90298
499			87	12	0.992554
1972	25		75		0.996473
2124		33	66		0.997452
2180		80		20	0.995493
2219	12			87	0.992554
2220	12			87	0.992554
2221		87		12	0.992554
2222		87	12		0.992554
2246	87		12		0.992554
2264		12		87	0.992554
2512		37	62		1.0
2524		35	64		1.0
2597	11			88	0.923564
2601	25		75		1.0
2602	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain