SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26862

Length: 523 nt

UniGene Fasta

>sp_v3.0_unigene26862
CGCCGCAGCGAGGTCCGACGACACTGCAAACTTGGGTACAGCGGCCATTGACAGCGCAAACATCGCAGCAAACAGCGCCGCGCACGATACACGTTCAACGAGGACACGGAAACACGTGGCCACGATGATCCAGCTGAAGACCCTCGTCAACTGCATCGACAACTCGGGCGCCGCGATAGTCGAGTGCGTCAATGTCCTGCGGTCGAAGCGGCCCGCCAAAGTCGGTGATCGCATTGTAGTCGTCGTCAAGAAGCAGCGAAATTTCGGCCCGGAGACTGGCAACAGCGTCTCCATCAGCGCGGCGAACAAAGTACGGCGAGGCGACGTTCGACATGCGGTCGTGGTGCGGACGGCAAAGAAGTGGCAGCGGCCCGACGGCAGCGTCGTCAAGTTCGACGACAACGCCTGCGTTCTGATCAACAAGGCGGGCGAACCGATCGGATCAAGAGTCAGCGGCGTGGTGGCAGCAGAGTTGAGGCAGAAGCAGTGGTCAAAGATATTGTCACTGGCGCCGATGCACGTA

Ace file of the UniGene sp_v3.0_unigene26862

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L14 n=4 Tax=Pleosporineae RepID=B2WH53_PYRTR	-	-	0.0	100%
FL-Next	sp=50S ribosomal protein L14, chloroplastic; Halocarpus kirkii. Plastid; Chloroplast.	-	-	0.0	40%

Source	GOs	Term	Type	Identity
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	0.0	-
Sma3	Ribosomal protein L14, bacterial-type	IPR005745	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: G8HSK6

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, No stop codon before M and low homology subject,

Fln protein: MIQLKTLVNCIDNSGAAIVECVNVLRSKRPAKVGDRIVVVVKKQRNFGPETGNSVSISAANKVRRGDVRHAVVVRTAKKWQRPDGSVVKFDDNACVLINKAGEPIGSRVSGVVAAELRQKQWSKILSLAPMHV

Protein Length: 134

Fln nts: CGCCGCAGCGAGGTCCGACGACACTGCAAACTTGGGTACAGCGGCCATTGACAGCGCAAACATCGCAGCAAACAGCGCCGCGCACGATACACGTTCAACGAGGACACGGAAACACGTGGCCACG_-_ATGATCCAGCTGAAGACCCTCGTCAACTGCATCGACAACTCGGGCGCCGCGATAGTCGAGTGCGTCAATGTCCTGCGGTCGAAGCGGCCCGCCAAAGTCGGTGATCGCATTGTAGTCGTCGTCAAGAAGCAGCGAAATTTCGGCCCGGAGACTGGCAACAGCGTCTCCATCAGCGCGGCGAACAAAGTACGGCGAGGCGACGTTCGACATGCGGTCGTGGTGCGGACGGCAAAGAAGTGGCAGCGGCCCGACGGCAGCGTCGTCAAGTTCGACGACAACGCCTGCGTTCTGATCAACAAGGCGGGCGAACCGATCGGATCAAGAGTCAGCGGCGTGGTGGCAGCAGAGTTGAGGCAGAAGCAGTGGTCAAAGATATTGTCACTGGCGCCGATGCACGTA

Fln Alignment:

Contig26862___MIQLKTLVNCIDNSGAAIVECVNVLRSKRP--AKVGDRIVVVVKKQRNFGPETGNSVSISAANKVRRGDVRHAVVVRTAKKWQRPDGSVVKFDDNACVLINKAGEPIGSRVSGVVAAELRQKQWSKILSLAP
G8HSK6_______________MIQSQTYLNVADNSGARKLMCIRVLGTSNPKYAHIGDVIIAVIKE-------------VVPNMPLKESEVVRAVVIRTCKELKRDNGMIIRSDDNAAVVIDQKGNPKGTRVFGSVARELRQLNFTKIVSLAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain