SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26737

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene26737
GTATGCATGCCGCAATTGTGATCACCAGGAGGTTGCAGAGAATAATTGTGTCTACAGAAATGAAATTCATCATTCAGCAAATGAATGCACAATGGTTTTGGATGATGTGACTTCTGATCCCACTCTACCACGTACTAAATCTGTTAGATGTGCTGTGTGCAATCATGGAGAAGCTGTCTTCTTTCAGGCTAGTTCAAGGGGAGACGATATGTGTC

Ace file of the UniGene sp_v3.0_unigene26737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase subunit n=7 Tax=Embryophyta RepID=Q2QNM4_ORYSJ	-	-	2.0e-27	78%
FL-Next	sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape).	-	-	0.0	82%
Sma3	DNA-directed RNA polymerase II 14.5 kDa polypeptide	-	-	4.89e-08	-

Source	Gene names
Sma3	At3g16980; GSVIVT00033123001; LOC_Os03g01230; LOC_Os12g37370; MtrDRAFT_AC149491g5v2; Os03g0102200; Os11g0676800; Os12g0560400; OsI_09622; OsI_38722; OsJ_09063; OsJ_36504; PHYPADRAFT_172071; POPTRDRAFT_805257; POPTRDRAFT_820572; RCOM_1000040; VITISV_024186

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TFIIS-type	IPR001222	-	-
Sma3	DNA-directed RNA polymerase, M/15kDa subunit	IPR001529	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	IPR019761	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16265.1	NRPB9B, NRPD9B, NRPE9B RNA polymerases M/15 Kd subunit chr4:9202529-9203975 REVERSE LENGTH=114	2.0e-37	75%
RefSeq	Arabidopsis thaliana	NP_567490.1	RNA polymerases M/15 Kd subunit [Arabidopsis thaliana]	3.0e-37	75%
RefSeq	Populus trichocarpa	XP_002312337.1	predicted protein [Populus trichocarpa]	7.0e-35	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AGZ7

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 71 - 114

Fln protein: YACRNCDHQEVAENNCVYRNEIHHSANECTMVLDDVTSDPTLPRTKSVRCAVCNHGEAVFFQASSRGDDMC

Protein Length: 72

Fln nts: GTATGCATGCCGCAATTGTGATCACCAGGAGGTTGCAGAGAATAATTGTGTCTACAGAAATGAAATTCATCATTCAGCAAATGAATGCACAATGGTTTTGGATGATGTGACTTCTGATCCCACTCTACCACGTACTAAATCTGTTAGATGTGCTGTGTGCAATCATGGAGAAGCTGTCTTCTTTCAGGCTAGTTCAAGGGGAGACGATATGTGTC

Fln Alignment:

Contig26737___YACRNCDHQEVAENNCVYRNEIHHSANECTMVLDDVTSDPTLPRTKSVRCAVCNHGEAVFFQASSRGDD
A5AGZ7_______________YACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
74			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain