SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26663

Length: 2711 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene26663
TTCCAGGAAGGCAAAAGATAGGTTCCTAAATATATTTCGGGTATATAAAGTTGTCGTGTCGTTGGGTATCTGTTCCATAGACATGGAAGGGTTCCTAACTTGAGGAAGATTTTCCACCTTTGTAGGTAGGTTGTCCCTTACGAATGAATGCTACAGTTGCGTAAGCTTCTATAGATTCTGAATAATTAATGTTATTCTCAGTCCCAGTCCCTATTTATTCATCTAGAAGGCTCGGTGCTCTGAATCTTTGCCCGTCTGGATTCAAAATTTGAACGAATTTCATCACAATGGTGTGGGGCGCATCGAAGAAGATTTTGCATGATGGGGTCGGTGCAGCCAGAGATAACACGACGGTGAATATAGAAGAAACATGCCCACTGAAGAATTCTGTGGGATCCCGTCCACAGAGCCGAAGCAGCAAAGTAAGCAAGGGAGCATCATGGACTGCACTGATAATTCTCATAGCTATTCTGGTTGGTTTCTTGACAATGCTCAAGGATGTGAGCAAATCCCAGCATTATGGCTTGGCCCGTGACAGAAGGCTTAAATATTTTCATAGCAGTTTCGTCAATGCAGGAAGCAATGTCTCCATTGCCAAACACCTGAAGGAACTCACGCGCCAGCCTCATGTGGCAGGCACACCCGGCGACATTTTAACTTCTGAGCATGTTTTGCAGAATTTCAAAGCATACGGGTTAGCAGCACACACTGTGGATTACAAGGTTCTGCTATCTTATCCTGTGTCTAGATATCTTTCCTTGTATTCCCCTGACACAGGATTGAAGTACCAATTCAATCTGGACGAGGAGTTTCAGAGTAACATTACCAGTACTAGATCTGTTATAGCGCCCTTCCATGCTTTTGCACCCTCGGGTACTGTTACCGGAGAAATTGTATACGTTAACTATGGACGTGAGGAGGATTACAGAATTTTGCAAGAGAAGGGAGTGGACGTGAGCGGAGCCATTGTAATTGCCAGACATGGAGATCTTTTCAGAGGAACCGTTGTCCAAAATGCCGCCAAAGCCGGTGCAATTGCGGCTCTTCTGTATAGCGATCCAGAGCAATTTGGTGGGAATGGAACAGAAGGTTACTTCCCGGACTCAAAATGGATGCCACTCAGTGCAGTCCAGAGAGGAACCGTCATGCACGGAAATGGCGATCCATTGACTCCCGGCTTCGCAAGCACTGAGTATGCCGAGAGATTATCAGTGTCGGCCAAGGAAGTTGCAGAAAAATTCCCTAGTATTCCCTCCATGCCCATATCTGCAAACGATGCCCGCCGCATTCTCATGTCGCTCTCAGGCCCTGCTGCACCGTCCAGTTGGCGGGGATCAATGAAATTGGATGAACATCATGGGCTCGGTAGAGGGCCCGGGATCCTTAATTTTAGCTATGTGGAAAACCAAACCATGGCCACGATTCGAAATGTGTTCGCTGTGATAAAGGGGTCAGAAGAGCCAGACAGGTTTGTTATTCTGGGGAACCATCGAGATGCCTGGACTTATGGAGCTGTGGATCCTAACAGCGGTACAGCTGTTCTTCTAGAAATTGCTAGGAATTTCGGCGTCTTGCTTCGCGACGGATGGCAACCTAGAAGGAGCATTATCCTCGGCAGTTGGGATGCAGAAGAGTATGGAATGATAGGATCCACAGAGTGGGTAGAACAGAATCTTGGAAACTTGGGCTCACAAGCAGTGGCCTACCTGAATGTTGATTGTGCTGTTCAAGGAAGTGGTTTTTTTGCTGGTGCCACACCACAGCTGGACAACCTTCTCGTTGAAGTTACGAAAGAGGTATCTGACCCAGATTCGAACTCCAAAACTGTTCACGAGTCTTGGGCTGCAACAGGCACTGGAATAAAGATTGACAGACTAGGTGGAGGCGGGTCTGATTTTGTAGCATTTTTGCAGCATGCTGGAGTGCCTTCACTTGATATCTTCTATGGGAAAGATTACCCTGTTTACCATACCCGTTACGACTCCTTCAGCTGGATGAAGAAGTTTGGCGATCCATACTTTCGTAGGCATGTGGCAGTTTATTCTATCTGGGGACTTCTTGCCCTACGCCTAGCTGACGACCACGTTCTTCCTTTCGATTATCTTGCGTATGCTTATGAGTTACAGCGGTATGCAGAGATGATAAAGGAGAGAATAAACACTTTCGATGCTGTAACTATAGAGCCTATCACTGCAGCCATTAAGGAGTTTTCTGATGCTGCCCATAAAGCTGCCGAGGAAGCTGAGGCTTTGAGAAAACACGGAAAGGGAGATGCACGAATAATTCTATGGAGAAGGGCCTTCAATGATCGCTTATTACTTACGGAGAGAGCATTTCTGGACCCCGAAGGCCTCAAGGGAAGGCCCTGGTTCAGACATTTGATTTATGCTCCTTCAGAAAGCAATGAATACAGTTTTTCATCATTTCCTGGAGTGGTGGATGCCATGGCCAATGCAACGAGTTCCAAAAATGGGGAAGCAAATGGTGAATTGCAGCATGAAATTTGGAGAGTTGCCAGAAGAATCATTCAAGCAACAGCTGCTCTACATGGAAGATTGACTTAATATATTCCATTATTTATAAGTGATGACGGTGTAAATATGTCACAGCACATCAATCATCTTATAATATATCATTTTTATTAATTTATCACTTTCTTACAGACCATGTCTTCTCTGACAATGTCTGGTAATAGAATGTAACAGTTTTAG

Ace file of the UniGene sp_v3.0_unigene26663 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase M28 family protein [Arabidopsis thaliana] gb\|AAP37682.1\| At5g19740 [Arabidopsis thaliana] gb\|AED92744.1\| Peptidase M28 family protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	sp=Probable glutamate carboxypeptidase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Sma3	Putative glutamate carboxypeptidase	-	-	7.21e-13	-

Source	Gene names
Sma3	AMP1; AT4g07670; At3g54720; At4g07670; At5g19740; F10A2.10; GSVIVT00005218001; GSVIVT00011333001; GSVIVT00016651001; GSVIVT00027120001; LOC_Os03g57660; OSJNBa0087O09.17; Os01g0740500; Os01g0743300; Os03g0790600; OsI_03679; OsI_03680; OsI_03696; OsI_13841;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	carboxypeptidase activity	GO:0004180	Molecular Function	-
Sma3	metallocarboxypeptidase activity	GO:0004181	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Transferrin receptor-like, dimerisation domain	IPR007365	-	-
Sma3	Peptidase M28	IPR007484	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19740.1	Peptidase M28 family protein chr5:6673986-6676767 FORWARD LENGTH=681	46%
RefSeq	Arabidopsis thaliana	NP_197475.2	Peptidase M28 family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002309233.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M1S8

Fln msg: your sequence is longer than subject: 759 - 705

Fln protein: MVWGASKKILHDGVGAARDNTTVNIEETCPLKNSVGSRPQSRSSKVSKGASWTALIILIAILVGFLTMLKDVSKSQHYGLARDRRLKYFHSSFVNAGSNVSIAKHLKELTRQPHVAGTPGDILTSEHVLQNFKAYGLAAHTVDYKVLLSYPVSRYLSLYSPDTGLKYQFNLDEEFQSNITSTRSVIAPFHAFAPSGTVTGEIVYVNYGREEDYRILQEKGVDVSGAIVIARHGDLFRGTVVQNAAKAGAIAALLYSDPEQFGGNGTEGYFPDSKWMPLSAVQRGTVMHGNGDPLTPGFASTEYAERLSVSAKEVAEKFPSIPSMPISANDARRILMSLSGPAAPSSWRGSMKLDEHHGLGRGPGILNFSYVENQTMATIRNVFAVIKGSEEPDRFVILGNHRDAWTYGAVDPNSGTAVLLEIARNFGVLLRDGWQPRRSIILGSWDAEEYGMIGSTEWVEQNLGNLGSQAVAYLNVDCAVQGSGFFAGATPQLDNLLVEVTKEVSDPDSNSKTVHESWAATGTGIKIDRLGGGGSDFVAFLQHAGVPSLDIFYGKDYPVYHTRYDSFSWMKKFGDPYFRRHVAVYSIWGLLALRLADDHVLPFDYLAYAYELQRYAEMIKERINTFDAVTIEPITAAIKEFSDAAHKAAEEAEALRKHGKGDARIILWRRAFNDRLLLTERAFLDPEGLKGRPWFRHLIYAPSESNEYSFSSFPGVVDAMANATSSKNGEANGELQHEIWRVARRIIQATAALHGRLT*

Protein Length: 760

Fln nts: TTCCAGGAAGGCAAAAGATAGGTTCCTAAATATATTTCGGGTATATAAAGTTGTCGTGTCGTTGGGTATCTGTTCCATAGACATGGAAGGGTTCCTAACTTGAGGAAGATTTTCCACCTTTGTAGGTAGGTTGTCCCTTACGAATGAATGCTACAGTTGCGTAAGCTTCTATAGATTCTGAATAATTAATGTTATTCTCAGTCCCAGTCCCTATTTATTCATCTAGAAGGCTCGGTGCTCTGAATCTTTGCCCGTCTGGATTCAAAATTTGAACGAATTTCATCACA_-_ATGGTGTGGGGCGCATCGAAGAAGATTTTGCATGATGGGGTCGGTGCAGCCAGAGATAACACGACGGTGAATATAGAAGAAACATGCCCACTGAAGAATTCTGTGGGATCCCGTCCACAGAGCCGAAGCAGCAAAGTAAGCAAGGGAGCATCATGGACTGCACTGATAATTCTCATAGCTATTCTGGTTGGTTTCTTGACAATGCTCAAGGATGTGAGCAAATCCCAGCATTATGGCTTGGCCCGTGACAGAAGGCTTAAATATTTTCATAGCAGTTTCGTCAATGCAGGAAGCAATGTCTCCATTGCCAAACACCTGAAGGAACTCACGCGCCAGCCTCATGTGGCAGGCACACCCGGCGACATTTTAACTTCTGAGCATGTTTTGCAGAATTTCAAAGCATACGGGTTAGCAGCACACACTGTGGATTACAAGGTTCTGCTATCTTATCCTGTGTCTAGATATCTTTCCTTGTATTCCCCTGACACAGGATTGAAGTACCAATTCAATCTGGACGAGGAGTTTCAGAGTAACATTACCAGTACTAGATCTGTTATAGCGCCCTTCCATGCTTTTGCACCCTCGGGTACTGTTACCGGAGAAATTGTATACGTTAACTATGGACGTGAGGAGGATTACAGAATTTTGCAAGAGAAGGGAGTGGACGTGAGCGGAGCCATTGTAATTGCCAGACATGGAGATCTTTTCAGAGGAACCGTTGTCCAAAATGCCGCCAAAGCCGGTGCAATTGCGGCTCTTCTGTATAGCGATCCAGAGCAATTTGGTGGGAATGGAACAGAAGGTTACTTCCCGGACTCAAAATGGATGCCACTCAGTGCAGTCCAGAGAGGAACCGTCATGCACGGAAATGGCGATCCATTGACTCCCGGCTTCGCAAGCACTGAGTATGCCGAGAGATTATCAGTGTCGGCCAAGGAAGTTGCAGAAAAATTCCCTAGTATTCCCTCCATGCCCATATCTGCAAACGATGCCCGCCGCATTCTCATGTCGCTCTCAGGCCCTGCTGCACCGTCCAGTTGGCGGGGATCAATGAAATTGGATGAACATCATGGGCTCGGTAGAGGGCCCGGGATCCTTAATTTTAGCTATGTGGAAAACCAAACCATGGCCACGATTCGAAATGTGTTCGCTGTGATAAAGGGGTCAGAAGAGCCAGACAGGTTTGTTATTCTGGGGAACCATCGAGATGCCTGGACTTATGGAGCTGTGGATCCTAACAGCGGTACAGCTGTTCTTCTAGAAATTGCTAGGAATTTCGGCGTCTTGCTTCGCGACGGATGGCAACCTAGAAGGAGCATTATCCTCGGCAGTTGGGATGCAGAAGAGTATGGAATGATAGGATCCACAGAGTGGGTAGAACAGAATCTTGGAAACTTGGGCTCACAAGCAGTGGCCTACCTGAATGTTGATTGTGCTGTTCAAGGAAGTGGTTTTTTTGCTGGTGCCACACCACAGCTGGACAACCTTCTCGTTGAAGTTACGAAAGAGGTATCTGACCCAGATTCGAACTCCAAAACTGTTCACGAGTCTTGGGCTGCAACAGGCACTGGAATAAAGATTGACAGACTAGGTGGAGGCGGGTCTGATTTTGTAGCATTTTTGCAGCATGCTGGAGTGCCTTCACTTGATATCTTCTATGGGAAAGATTACCCTGTTTACCATACCCGTTACGACTCCTTCAGCTGGATGAAGAAGTTTGGCGATCCATACTTTCGTAGGCATGTGGCAGTTTATTCTATCTGGGGACTTCTTGCCCTACGCCTAGCTGACGACCACGTTCTTCCTTTCGATTATCTTGCGTATGCTTATGAGTTACAGCGGTATGCAGAGATGATAAAGGAGAGAATAAACACTTTCGATGCTGTAACTATAGAGCCTATCACTGCAGCCATTAAGGAGTTTTCTGATGCTGCCCATAAAGCTGCCGAGGAAGCTGAGGCTTTGAGAAAACACGGAAAGGGAGATGCACGAATAATTCTATGGAGAAGGGCCTTCAATGATCGCTTATTACTTACGGAGAGAGCATTTCTGGACCCCGAAGGCCTCAAGGGAAGGCCCTGGTTCAGACATTTGATTTATGCTCCTTCAGAAAGCAATGAATACAGTTTTTCATCATTTCCTGGAGTGGTGGATGCCATGGCCAATGCAACGAGTTCCAAAAATGGGGAAGCAAATGGTGAATTGCAGCATGAAATTTGGAGAGTTGCCAGAAGAATCATTCAAGCAACAGCTGCTCTACATGGAAGATTGACTTAA___TATATTCCATTATTTATAAGTGATGACGGTGTAAATATGTCACAGCACATCAATCATCTTATAATATATCATTTTTATTAATTTATCACTTTCTTACAGACCATGTCTTCTCTGACAATGTCTGGTAATAGAATGTAACAGTTTTAG

Fln Alignment:

Contig26663___YGLARDRRLKYFHSSFVNAGSNVSIAKHLKELTRQPHVAGTPGDILTSEHVLQNFKAYGLAAHTVDYKVLLSYPVSRYLSL-YSPDTGLKYQFNLDEEFQSNITSTRSVIAPFHAFAPSGTVTGEIVYVNYGREEDYRILQEKGVDVSGAIVIARHGD-LFRGTVVQNXXXXXXXXALLYSDPEQFGGNGTEGYFPDSKWMPLSAVQRGTVMHGNGDPLTPGFASTEYAERLSVSAKEVAEKFPSIPSMPISANDARRILMSLSGPAAPSSWRGSMKLDEHHGLGRGPGILNFSYVENQTMATIRNVFAVIKGSEEPDRFVILGNHRDAWTYGAVDPNSGTAVLLEIARNFGVLLRDGWQPRRSIILGSWDAEEYGMIGSTEWVEQNLGNLGSQAVAYLNVDCAVQGSGFFAGATPQLDNLLVEVTKEVSDPDSNSKTVHESWAATGTGIKIDRLGGGGSDFVAFLQHAGVPSLDIFYGKDYPVYHTRYDSFSWMKKFGDPYFRRHVAVYSIWGLLALRLADDHVLPFDYLAYAYELQRYAEMIKERINTFDAVTIEPITAAIKEFSDXXXXXXXXXXAL--RKHGKGDARIILWRRAFNDRLLLTERAFLDPEGLKGRPWFRHLIYAPSESNEYSFSSFPGVVDAMANATSSKNGEANGELQHEIWRVARRIIQATAALHGRLT
Q9M1S8_______________YNALRLRRL------FLSSASNATISSYLRELTRHPHLAGTKPSLDTLHYVFNHFQSLGLETHVAEYEALLSYPTHISVTASFSNTTTLEFDLN-------DVPGDSPVVRPYHAYSPSGSAQGNVVFVNHGEERDYHALESIGVSVKGCVVLARKGENLGRGAIVKIAEAKGALGVLIYAENDGGGFGG---------------IERGTVMRGIGDPVSPGWPGVVGGEKLSLDDELVTRRFPKIPSLPLSLRNAEIILASLGGARAPLEWRNSGRVGPGQRVGPGRMVINMTFQGEMKMKKINNVVVTIRGSEEADRYVILGNHRDAWTYGAVDPNSGTSALLDISRRFALLLKSGWRPRRTILLCSWDAEEFGMIGSTEWIEENVLNLGASAVAYLNVDCAVQGSGFFAGATPQLDGLLVDVLKLVQDPDAVGLTVEETFKSQNN--IIQRLSRVDSDFSGFLHHAGIPSIDMYYGADYPVYHTAFDSYDWMIHNADPLFHRHVAMAGIWGLLGILLADEPLIPFDYISYADQLQAHRDKLSKLLE--GKVSVNPLSMAIQEFSLVAKEAADEAKKLKGKSYSKNDVAAAAKRRELNDRLMLVERGFLDAEGIKGKEWFKHLVYGPAAEPESKLGFFPGIADAIAMNAS------EGIIEHEIWRVARAIQRASKALKGGFT

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
992	75		25		0.996473
1291		10		90	0.90298
1383	14	85			0.993533
1384			85	14	0.993533
1593	60		40		1.0
1613		66		33	0.997452
1621			33	66	0.997452
1625	33	66			0.997452
2468	90		10		0.90298
2505			90	10	0.90298
2509	10			90	0.90298
2511		10	90		0.90298
2512		10	90		0.90298
2515	10			90	0.90298
2517	90		10		0.90298
2518			90	10	0.90298
2521		10		90	0.90298
2522	90		10		0.90298
2525	90		10		0.90298
2639			71	28	1.0
2642	33	33	33		1.0
2644	33	33		33	1.0
2645		33	66		1.0
2647		33		66	1.0
2649		25	50		0.995533
2651		75		25	0.996473
2652	75			25	0.996473
2653	75	25			0.996473
2654		50	50		1.0
2655		25	50	25	0.995533
2656	25			75	0.996473
2659	50			50	1.0
2663		50		50	1.0
2664	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain