SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26543

Length: 435 nt

UniGene Fasta

>sp_v3.0_unigene26543
ATTTGGTCTCACTCTGATAGTGTTGTGGACATGAATGGTATCATGAGTAATGATATTCATTGTATTCTGCTTACTTTAGGCGTTGAAGCTGCAAGATTATGTATTGTCAATGAGATTACAGCTGTGTTTGGAGTTTATGGTATTGATGTAAATCCGAGACATTTAAGTCTTATTGCTGATTTTATGACTCGTAATGGAACATACTCAGCAATGAATCGAATTGGTATGAATGAATGTTCTTCGCCCTTCTTGCAGATGAGTTTTGAGACCACCTGTAGTTTCCTTACAAAAGCCGCATTTGAAGGATTATCCGACAATCAAGAATCTCCCAGTGCGAGAATCGTGTTGGGTTCGGTTGCTAAAGTTGGCACCGGATGTTTTGATCTTATGCTTCCTTTAGTTGTGTAGATTTGCTGTAAGTTTAAATGTTCATTG

Ace file of the UniGene sp_v3.0_unigene26543

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase n=1 Tax=Blastocystis hominis RepID=D8LZZ3_BLAHO	-	-	5.0e-35	57%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	34%
Sma3	DNA-directed RNA polymerase	-	-	2.855e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase.	EC:2.7.7.6	-	1.699e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.699e-10	%
Sma3	Pyrimidine metabolism	00240	1.699e-10	%
Sma3	Metabolic pathways	01100	1.699e-10	%

Source	Gene names
Sma3	At3g57660; F15B8.150; GSVIVT00025547001; MICPUCDRAFT_36623; MICPUN_65110; OSTLU_43496; Os06g0612200; OsI_23688; OsJ_21960; Ot14g01100; P0429G06.12; PHATRDRAFT_bd955; POPTRDRAFT_762153; RCOM_0090500; RPA1; THAPSDRAFT_40884;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	DNA-directed RNA pol I, largest subunit	IPR015699	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57660.1	NRPA1 nuclear RNA polymerase A1 chr3:21353746-21362814 FORWARD LENGTH=1670	2.0e-31	51%
RefSeq	Arabidopsis thaliana	NP_191325.1	DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]	3.0e-31	51%
RefSeq	Populus trichocarpa	XP_002308050.1	predicted protein [Populus trichocarpa]	2.0e-34	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P18616

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 359 aas, your sequence is shorter than subject: 136 - 1839

Fln protein: IWSHSDSVVDMNGIMSNDIHCILLTLGVEAARLCIVNEITAVFGVYGIDVNPRHLSLIADFMTRNGTYSAMNRIGMNECSSPFLQMSFETTCSFLTKAAFEGLSDNQESPSARIVLGSVAKVGTGCFDLMLPLVV*

Protein Length: 137

Fln nts: ATTTGGTCTCACTCTGATAGTGTTGTGGACATGAATGGTATCATGAGTAATGATATTCATTGTATTCTGCTTACTTTAGGCGTTGAAGCTGCAAGATTATGTATTGTCAATGAGATTACAGCTGTGTTTGGAGTTTATGGTATTGATGTAAATCCGAGACATTTAAGTCTTATTGCTGATTTTATGACTCGTAATGGAACATACTCAGCAATGAATCGAATTGGTATGAATGAATGTTCTTCGCCCTTCTTGCAGATGAGTTTTGAGACCACCTGTAGTTTCCTTACAAAAGCCGCATTTGAAGGATTATCCGACAATCAAGAATCTCCCAGTGCGAGAATCGTGTTGGGTTCGGTTGCTAAAGTTGGCACCGGATGTTTTGATCTTATGCTTCCTTTAGTTGTGTAGATTTGCTGTAAGTTTAAATGTTCATTG

Fln Alignment:

Contig26543___IWSHSDSVVDMNGIMSNDIHCILLTLGVEAARLCIVNEITAVFGVYGIDVNPRHLSLIADFMTRNGTYSAMNRIGMN-ECSSPFLQMSFETTCSFLTKAAFEGLSDNQESPSARIVLGSVAKVGTGCFDLML
P18616_______________VMCHED--VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain