SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26267

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene26267
AAGACACCACCGCGACCATGGATATCCGACTGCTACCGTCCTCGGACATACCGCATGTGCAACATGCAAATATCACAAACTTGCCTGAGAATTATTTCATGAAATATTACCTCTACCATGCCCTCTCCTGGCCACAGCTCTCCTACGTCGCCGTCGATGTCTCTCGCCCTCAGAAGTCTCCCTATGACTACCCTCGCATCGTAGGATACGTGCTTGCGAAGATG

Ace file of the UniGene sp_v3.0_unigene26267

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyltransferase n=1 Tax=Glomerella graminicola M1.001 RepID=E3QNA5_COLGM	-	-	5.0e-29	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13780.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr5:4447610-4448603 REVERSE LENGTH=192	8.0e-15	55%
RefSeq	Arabidopsis thaliana	NP_196882.1	peptide alpha-N-acetyltransferase [Arabidopsis thaliana]	1.0e-14	55%
RefSeq	Populus trichocarpa	XP_002338285.1	predicted protein, partial [Populus trichocarpa]	6.0e-14	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0M7

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 69 - 184

Fln protein: MDIRLLPSSDIPHVQHANITNLPENYFMKYYLYHALSWPQLSYVAVDVSRPQKSPYDYPRIVGYVLAKM

Protein Length: 70

Fln nts: AAGACACCACCGCGACC_-_ATGGATATCCGACTGCTACCGTCCTCGGACATACCGCATGTGCAACATGCAAATATCACAAACTTGCCTGAGAATTATTTCATGAAATATTACCTCTACCATGCCCTCTCCTGGCCACAGCTCTCCTACGTCGCCGTCGATGTCTCTCGCCCTCAGAAGTCTCCCTATGACTACCCTCGCATCGTAGGATACGTGCTTGCGAAGATG

Fln Alignment:

Contig26267___IRLLPSSDIPHVQHANITNLPENYFMKYYLYHALSWPQLSYVAVDVSRPQKSPYDYPRIVGYVLAKM
A9P0M7_______________IRQATMEDLLSMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNK---------KIVGYVLAKM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain