SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26073

Length: 569 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene26073
TCCGAGACCAAGCTCGGCCTCAAGCGCGTCCGCATCATCCGCACGCGCGGTGGCAACTCCAAGTTCCGTGCCCTCCGCCTTCAGCTCGGAAACTACTCGTGGGCCAGCGAGGCAGTCACCCGCCGCACTCGTATCCTCGATGTCGTCTACAACGCTTCCAGCAACGAGCTTGTCCGCACCAAGACCCTCGTCAAGGGCACCATTGTTGTCATTGATGCTGCTCCCTTCCGCCGCTGGTACGAGAACCACTACGCCATTTCTCTCGGCCGCAAGAAGAAGACCAACGCCGGTGTCCCCGAGCCCCGCGCCGTCACCAAGAAGCGTTCTTTCCACCTGAAGAAGAAGATTGCTGATCGCGCCAAGCTCGCCCCCGTCGAGCAGAAGCTCGAGGAGCAGTTCGGCAACGGCCGCCTCTACGCCCGCATCGCCTCCCGACCTGGCCAGAGCGGTCGCGCTGACGGATACATCCTTGAGGGCAAGGAGCTTGACTTCTACATCAAGAAGCTCAAGGCCAAGAAATAAGCGTAAACTATCCCACGGCGGTCACAATAAAAACAATGTCAGTACTA

Ace file of the UniGene sp_v3.0_unigene26073 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 n=1 Tax=Lineus viridis RepID=B0Z9Q0_9BILA	-	-	65%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Sma3	Ribosomal protein S8	-	-	-

Source	Gene names
Sma3	57h21.8; At5g20290; At5g59240; CHLREDRAFT_195605; F5O24_180; GSVIVT00003491001; GSVIVT00012482001; GSVIVT00027218001; MICPUCDRAFT_34143; MICPUN_95694; OSJNBa0038P21.4; OSTLU_29541; Os02g0489400; Os04g0349500; OsI_07259; OsI_15456; OsJ_06781; OsJ_14370; Ot

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20290.1	Ribosomal protein S8e family protein chr5:6851695-6853012 REVERSE LENGTH=222	59%
RefSeq	Arabidopsis thaliana	NP_197529.1	40S ribosomal protein S8-1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002298850.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMR0

Fln msg: your sequence is shorter than subject: 174 - 221

Fln protein: SETKLGLKRVRIIRTRGGNSKFRALRLQLGNYSWASEAVTRRTRILDVVYNASSNELVRTKTLVKGTIVVIDAAPFRRWYENHYAISLGRKKKTNAGVPEPRAVTKKRSFHLKKKIADRAKLAPVEQKLEEQFGNGRLYARIASRPGQSGRADGYILEGKELDFYIKKLKAKK*

Protein Length: 175

Fln nts: TCCGAGACCAAGCTCGGCCTCAAGCGCGTCCGCATCATCCGCACGCGCGGTGGCAACTCCAAGTTCCGTGCCCTCCGCCTTCAGCTCGGAAACTACTCGTGGGCCAGCGAGGCAGTCACCCGCCGCACTCGTATCCTCGATGTCGTCTACAACGCTTCCAGCAACGAGCTTGTCCGCACCAAGACCCTCGTCAAGGGCACCATTGTTGTCATTGATGCTGCTCCCTTCCGCCGCTGGTACGAGAACCACTACGCCATTTCTCTCGGCCGCAAGAAGAAGACCAACGCCGGTGTCCCCGAGCCCCGCGCCGTCACCAAGAAGCGTTCTTTCCACCTGAAGAAGAAGATTGCTGATCGCGCCAAGCTCGCCCCCGTCGAGCAGAAGCTCGAGGAGCAGTTCGGCAACGGCCGCCTCTACGCCCGCATCGCCTCCCGACCTGGCCAGAGCGGTCGCGCTGACGGATACATCCTTGAGGGCAAGGAGCTTGACTTCTACATCAAGAAGCTCAAGGCCAAGAAATAA___GCGTAAACTATCCCACGGCGGTCACAATAAAAACAATGTCAGTACTA

Fln Alignment:

Contig26073___SETKLGL-KRVRIIRTRGGNSKFRALRLQLGNYSWASEAVTRRTRILDVVYNASSNELVRTKTLVKGTIVVIDAAPFRRWYENHYAISLGRKKKTNAGVPE-------PRAVTKKRSFHLKKKIADRAKLAPVEQKLEEQFGNGRLYARIASRPGQSGRADGYILEGKELDFYI
A9NMR0_______________SMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYGLDIGRKKKAAAAKKETTEEGEATAEEEKKKSKHLLKKIEKRQEGHKLDSHLEEQFGSGRLLAAIASRPGQCGRADGYILEGRELEFYL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
3	33	33	33		0.997753
4		33		66	0.997452
161		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain