SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25989

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene25989
GTCAATGGTACGAATCTCACTACGCTCTCCCTCTTGGTAAGCAAAAGTCTGGCGAGGAAGCCGCTTCTGCTGAAAAGAAATCAAAGAGTGTCGAAAAGAAGATTGCCGCTCGTGCCGCTACTGCTGCTATCGACCCTCTCTTGAACGACCAATTCAACGCTGGTCGTCTCTATGCTGTCATTGCTTCTCGTCCTGGTCAATCCGGTCGTTGTGATGGTTACATTCTTGAGGGTAAGGAACTTGAATTCTACCTCCGTAAGATCAAGTCCAAGAAGCAACACTAAATATATTTTGGCTATTATATTGTATACAATGGTTTTCAAGTAGTCTGAAATTGTTAAATAAAATGTTGCATATT

Ace file of the UniGene sp_v3.0_unigene25989 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S8 n=5 Tax=Culicini RepID=B0WXU4_CULQU	-	-	1.0e-18	55%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Ribosomal protein S8	-	-	5.209e-35	-

Source	Gene names
Sma3	At5g20290; At5g59240; CHLREDRAFT_195605; F5O24_180; GSVIVT00008002001; Ot14g02710; PHYPADRAFT_110504; PHYPADRAFT_191463; PHYPADRAFT_194737; PHYPADRAFT_194964; PHYPADRAFT_208398; POPTRDRAFT_641311; RPS8; RPS8A; RPS8B; RS8; RpS8b; THAPSDRAFT_29825; VITISV_0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59240.1	Ribosomal protein S8e family protein chr5:23902626-23903670 REVERSE LENGTH=210	2.0e-16	67%
RefSeq	Arabidopsis thaliana	NP_200732.2	40S ribosomal protein S8-2 [Arabidopsis thaliana]	2.0e-16	67%
RefSeq	Populus trichocarpa	XP_002298850.1	predicted protein [Populus trichocarpa]	6.0e-17	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMR0

Fln msg: your sequence is shorter than subject: 94 - 221

Fln protein: QWYESHYALPLGKQKSGEEAASAEKKSKSVEKKIAARAATAAIDPLLNDQFNAGRLYAVIASRPGQSGRCDGYILEGKELEFYLRKIKSKKQH*

Protein Length: 95

Fln nts: GTCAATGGTACGAATCTCACTACGCTCTCCCTCTTGGTAAGCAAAAGTCTGGCGAGGAAGCCGCTTCTGCTGAAAAGAAATCAAAGAGTGTCGAAAAGAAGATTGCCGCTCGTGCCGCTACTGCTGCTATCGACCCTCTCTTGAACGACCAATTCAACGCTGGTCGTCTCTATGCTGTCATTGCTTCTCGTCCTGGTCAATCCGGTCGTTGTGATGGTTACATTCTTGAGGGTAAGGAACTTGAATTCTACCTCCGTAAGATCAAGTCCAAGAAGCAACACTAA___ATATATTTTGGCTATTATATTGTATACAATGGTTTTCAAGTAGTCTGAAATTGTTAAATAAAATGTTGCATATT

Fln Alignment:

Contig25989___QWYESHYALPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAI------------DPLLNDQFNAGRLYAVIASRPGQSGRCDGYILEGKELEFYLRKIKSKK
A9NMR0_______________QWYEQHYGLDIGRKKKAAAAKKETTEEGEATAEEEKKKSKHLLKKIEKRQEGHKLDSHLEEQFGSGRLLAAIASRPGQCGRADGYILEGRELEFYLKKIQRKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain