SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25929

Length: 550 nt

UniGene Fasta

>sp_v3.0_unigene25929
AGGCAGAGGGCTGAGCGCGTCTCGATGAAGAGAATCCGCATCGCTAAGCTCATTGTCAACTGCTGCGTTGGAGAGAGCGGTGACAGATTGACGAGAGCCGCTAAGGTGCTCGAGGAGCTTGCCGAGCAGAAGCCTGTTTTCTCAAAGGCCCGCCTCACTGTCCGCACATTCGGTATCCGCCGTAATGAGAAGATCGCCGTCCACGTCACCATCCGCGGCAAGAAGGCTGAGGAGATTCTCAACAAGGCTCTCCGCGTCAAGGAGTATGAACTCAAGGCTCGCAACTTCAGCGAGACTGGAAACTTCGGCTTCGGCGTTGATGAGCACATCGACCTTGGTCTCAAGTATGACCCCAACATTGGAATCTACGGAATGGATTTCTTCGTTGTCCTTGACCGCCCGGGCTACCGCGTCGCTCAGAGAAAGCGCAAACAGGCCCATGTTGGTGTTCAACACCGTCTGACTAGAGATGACGCTCAGAAATGGTTCAAGACCAAGTTCGCTGGCCACATCCGCGACTAAACCTCTTTTCAGTAAACCCAGTTCGAGG

Ace file of the UniGene sp_v3.0_unigene25929

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	YALI0B15103p n=1 Tax=Yarrowia lipolytica CLIB122 RepID=Q6CEJ8_YARLI	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Ribosomal protein L11	-	-	3.907e-11	-

Source	Gene names
Sma3	At2g42740; At3g58700; At4g18730; At5g45775; CHLREDRAFT_195587; F28A21.140; GSVIVT00018776001; GSVIVT00035844001; L16; MICPUCDRAFT_24004; MICPUN_89807; MRA19.26; MRA19_21; OJ1077_A12.6; OSTLU_30777; Os01g0205500; Os02g0235600; Os06g0550000; OsI_00826; OsI_

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L5	IPR002132	-	0.0	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G42740.1	RPL16A ribosomal protein large subunit 16A chr2:17791794-17792946 FORWARD LENGTH=182	68%
RefSeq	Arabidopsis thaliana	NP_850376.2	60S ribosomal protein L11-1 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002309361.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPD1

Fln msg: atg_distance in limit (1-15): atg_distance = 3,

Fln protein: MKRIRIAKLIVNCCVGESGDRLTRAAKVLEELAEQKPVFSKARLTVRTFGIRRNEKIAVHVTIRGKKAEEILNKALRVKEYELKARNFSETGNFGFGVDEHIDLGLKYDPNIGIYGMDFFVVLDRPGYRVAQRKRKQAHVGVQHRLTRDDAQKWFKTKFAGHIRD*

Protein Length: 167

Fln nts: AGGCAGAGGGCTGAGCGCGTCTCG_-_ATGAAGAGAATCCGCATCGCTAAGCTCATTGTCAACTGCTGCGTTGGAGAGAGCGGTGACAGATTGACGAGAGCCGCTAAGGTGCTCGAGGAGCTTGCCGAGCAGAAGCCTGTTTTCTCAAAGGCCCGCCTCACTGTCCGCACATTCGGTATCCGCCGTAATGAGAAGATCGCCGTCCACGTCACCATCCGCGGCAAGAAGGCTGAGGAGATTCTCAACAAGGCTCTCCGCGTCAAGGAGTATGAACTCAAGGCTCGCAACTTCAGCGAGACTGGAAACTTCGGCTTCGGCGTTGATGAGCACATCGACCTTGGTCTCAAGTATGACCCCAACATTGGAATCTACGGAATGGATTTCTTCGTTGTCCTTGACCGCCCGGGCTACCGCGTCGCTCAGAGAAAGCGCAAACAGGCCCATGTTGGTGTTCAACACCGTCTGACTAGAGATGACGCTCAGAAATGGTTCAAGACCAAGTTCGCTGGCCACATCCGCGACTAA___ACCTCTTTTCAGTAAACCCAGTTCGAGG

Fln Alignment:

Contig25929___MKRIRIAKLIVNCCVGESGDRLTRAAKVLEELAEQKPVFSKARLTVRTFGIRRNEKIAVHVTIRGKKAEEILNKALRVKEYELKARNFSETGNFGFGVDEHIDLGLKYDPNIGIYGMDFFVVLDRPGYRVAQRKRKQAHVGVQHRLTRDDAQKWFKTKFAGHI
A9NPD1_______________MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKALQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRIGRRKRAQSRVGIQHRVTKDDAMKWFQVKYEGVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain