SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25858

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene25858
TGACAAGACTGTCAGAGTGTGGAATCTTAGCAAGAAGACTTCTAAGACTTTAACTGGTCACACCGGAATCCTTAACGCGGTCGCTGTTGCTCCCAACGGCTCCGTGTGTGCCTCTGGAGGAAAAGACGGCAAAGTTAAAGTCTGGGATTTGGTTGAAGAAGGCTCTGTGTACGACTTGGAAGCTGGATCAACCATTAACGCCCTTGCCTTCAGCCCCAGCCATCTTGTTTTAGTTGCGGCCACTCAAAAGGGCCTTAAATTTTGGAACTTAAAGAAGCGAGTCATTGCTGCCGAGGTTGACAAGAAAGTCAAAGACTTCTTCCCCAACAGAAAGAAGACCGCTAAGGAACCCCAAGCCTTTCCCATCAGTCTCGCCTGGAGTTATGATGGTAGCCGTCTCTTTGTTGGCTACACTGACCACCACATCCGTGTTTTCGAGGTGTCGGAAAAAACCGTGATCGCCTAAAGACTTGATAAAAAAACATTT

Ace file of the UniGene sp_v3.0_unigene25858

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	guanine nucleotide binding protein beta polypeptide 2-like 1 [Lethenteron japonicum]	-	-	2.0e-31	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Guanine nucleotide-binding protein subunit beta-like protein	-	-	1.034e-18	-

Source	Gene names
Sma3	ARCA; At1g18080; At1g48630; CHLREDRAFT_105734; F11I4_18; F9P7.2; GB1; GBLP; GSVIVT00017791001; LOC_Os01g49290; LeArcA1; LeArcA2; MICPUCDRAFT_28307; MICPUN_94482; OSJNBa0079H23.13; OSTLU_19794; OSTLU_48240; Os01g0686800; Os05g0552300; OsI_03315; OsI_20897;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18080.1	ATARCA, RACK1A_AT, RACK1A Transducin/WD40 repeat-like superfamily protein chr1:6222325-6223901 FORWARD LENGTH=327	3.0e-38	50%
RefSeq	Arabidopsis thaliana	NP_173248.1	guanine nucleotide-binding protein subunit beta-like protein [Arabidopsis thaliana]	4.0e-38	50%
RefSeq	Populus trichocarpa	XP_002318528.1	predicted protein [Populus trichocarpa]	6.0e-38	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTF3

Fln msg: your sequence is shorter than subject: 155 - 321

Fln protein: DKTVRVWNLSKKTSKTLTGHTGILNAVAVAPNGSVCASGGKDGKVKVWDLVEEGSVYDLEAGSTINALAFSPSHLVLVAATQKGLKFWNLKKRVIAAEVDKKVKDFFPNRKKTAKEPQAFPISLAWSYDGSRLFVGYTDHHIRVFEVSEKTVIA*

Protein Length: 156

Fln nts: TGACAAGACTGTCAGAGTGTGGAATCTTAGCAAGAAGACTTCTAAGACTTTAACTGGTCACACCGGAATCCTTAACGCGGTCGCTGTTGCTCCCAACGGCTCCGTGTGTGCCTCTGGAGGAAAAGACGGCAAAGTTAAAGTCTGGGATTTGGTTGAAGAAGGCTCTGTGTACGACTTGGAAGCTGGATCAACCATTAACGCCCTTGCCTTCAGCCCCAGCCATCTTGTTTTAGTTGCGGCCACTCAAAAGGGCCTTAAATTTTGGAACTTAAAGAAGCGAGTCATTGCTGCCGAGGTTGACAAGAAAGTCAAAGACTTCTTCCCCAACAGAAAGAAGACCGCTAAGGAACCCCAAGCCTTTCCCATCAGTCTCGCCTGGAGTTATGATGGTAGCCGTCTCTTTGTTGGCTACACTGACCACCACATCCGTGTTTTCGAGGTGTCGGAAAAAACCGTGATCGCCTAA___AGACTTGATAAAAAAACATTT

Fln Alignment:

Contig25858___DKTVRVWNLSK-KTSKTLTGHTGILNAVAVAPNGSVCASGGKDGKVKVWDLVEEGSVYDLEAGSTINALAFSPSHLVLVAATQKGLKFWNLKKRVIAAEVDKKVKDFFPNRKKTAKEPQAFPISLAWSYDGSRLFVGYTDHHIRVFEV
C0PTF3_______________DRTVKVWNLANCKLRTTLTGHSGYINTCTVSPDGSLCASGGKDGVAMLWDLAEGKRLYSLDSGDIINSLCFSPNRYWLCAATQQCVKIWDLESKSV-------VEELRPNFNPTKKGQVPFCTSLAWSADGSTLFSGYTDGVIRVWGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain