SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25794

Length: 380 nt

UniGene Fasta

>sp_v3.0_unigene25794
ATCAGTGGGGCAGCGACACGAAGCTCATCTACCGACACTACGCCACACTCTACTTCGTCTTTTGCGTGGACTCTTCGGAAAGCGAGCTGGGCATCCTCGATCTCATTCACATCTTCGTTGAAGCGCTCGACAAATCTTTCGAGAACGTGTGCGAGCTCGACCTCATCTTCCACGCCGACAAGGTGCATCACATCCTCGACGAGTTGGTGATGGGTGGCATGGTCCTGGAGACCAATCTGCCCCTCATCACGGGTGCTGTGGACGATCAGAACAAGCTGGAGAAAGCGGAAGCTCCACTGAAGCAAGGCATAAAGGACGCCATGGCCAAGAAGATCTTCACGTGAGAGAAGAGAGCGAGCATGATCTCTGTCTTTGCACAT

Ace file of the UniGene sp_v3.0_unigene25794

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to clathrin coat assembly protein [Nasonia vitripennis]	-	-	3.0e-38	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Gene names
Sma3	AP3sigma; APS3; At3g50860; F18B3.140; GSVIVT00024929001; LOC_Os03g12710; MICPUCDRAFT_36827; MICPUN_108582; MICPUN_113873; OSTLU_28054; Os03g0228400; OsI_10617; OsJ_10010; Ot17g01060; PHATRDRAFT_14536; PHYPADRAFT_136360; PHYPADRAFT_200793; POPTRDRAFT_67922

Source	GOs	Term	Type	Identity
Sma3	membrane coat	GO:0030117	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Clathrin adaptor complex, small chain	IPR000804	-	0.0	-
Sma3	Adaptor protein complex, sigma subunit	IPR016635	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50860.1	Clathrin adaptor complex small chain family protein chr3:18902346-18903959 FORWARD LENGTH=166	7.0e-32	55%
RefSeq	Arabidopsis thaliana	NP_190655.2	AP-3 complex subunit sigma [Arabidopsis thaliana]	9.0e-32	55%
RefSeq	Populus trichocarpa	XP_002310231.1	predicted protein [Populus trichocarpa]	8.0e-33	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A981

Fln msg: your sequence is shorter than subject: 114 - 164

Fln protein: QWGSDTKLIYRHYATLYFVFCVDSSESELGILDLIHIFVEALDKSFENVCELDLIFHADKVHHILDELVMGGMVLETNLPLITGAVDDQNKLEKAEAPLKQGIKDAMAKKIFT*

Protein Length: 115

Fln nts: ATCAGTGGGGCAGCGACACGAAGCTCATCTACCGACACTACGCCACACTCTACTTCGTCTTTTGCGTGGACTCTTCGGAAAGCGAGCTGGGCATCCTCGATCTCATTCACATCTTCGTTGAAGCGCTCGACAAATCTTTCGAGAACGTGTGCGAGCTCGACCTCATCTTCCACGCCGACAAGGTGCATCACATCCTCGACGAGTTGGTGATGGGTGGCATGGTCCTGGAGACCAATCTGCCCCTCATCACGGGTGCTGTGGACGATCAGAACAAGCTGGAGAAAGCGGAAGCTCCACTGAAGCAAGGCATAAAGGACGCCATGGCCAAGAAGATCTTCACGTGA___GAGAAGAGAGCGAGCATGATCTCTGTCTTTGCACAT

Fln Alignment:

Contig25794___WGSDTKLIYRHYATLYFVFCVDSSESELGILDLIHIFVEALDKSFENVCELDLIFHADKVHHILDELVMGGMVLETNLPLITGAVDDQNKLEKA
D5A981_______________FGPGTKLVYKHFATLYFVFVFDSCENELAILDLIQVFVETLDKCFKNVCELDIVFNFNKLHTVLDEIIMGGQVVETNSAEVMKTVQEILKLERS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
125	16		83		0.994512
176		83		16	0.994512
215		16		83	0.994512
236		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain