SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25769

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene25769
CCTTTCGGTCGCGCACATCATGAACACCTCCACCTCTGCTCTTCTTGCTTTTGTCTTGTTTTCCATTTGCTTCACTGTCTGTCTCAGTGTCAGCATCAACGTGATCCCTTTCAAGTCCGATGTTCGTGCTGGCAATGCTTGCAACAACACAGCAGACCTGACCACTTTTAACAACACCTGGACCACTTTCCACGGCCTCCTCCAAGGTTGTGCTGTTGGATGTGTGGGAAAGGAAGACTGTGTCGTTGATTGCATTGTTAAAAAGATTGGTTTGACCCAACCTTGTGCCCAATGCTTCGGGGACGATGCTGCTTGCACTCAGAAACACTGCACCTTCCAATGCTTGAACCCCGCCTCCCCCGGCTGCGTTGCGTGCTCCAAGAAGTTCTGCCTTGGCCCTCTGGTCGATTGTGCTGGAGTTCCTGCTGACAAGCTTCCACAATA

Ace file of the UniGene sp_v3.0_unigene25769 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vanabin-2 domain containing protein	-	-	1.0e-05	23%
FL-Next	tr=Predicted protein; Phaeodactylum tricornutum (strain CCAP 1055/1).	-	-	0.0	28%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B7G7P5

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 147 - 671

Fln protein: LSVAHIMNTSTSALLAFVLFSICFTVCLSVSINVIPFKSDVRAGNACNNTADLTTFNNTWTTFHGLLQGCAVGCVGKEDCVVDCIVKKIGLTQPCAQCFGDDAACTQKHCTFQCLNPASPGCVACSKKFCLGPLVDCAGVPADKLPQ

Protein Length: 148

Fln nts: CCTTTCGGTCGCGCACATCATGAACACCTCCACCTCTGCTCTTCTTGCTTTTGTCTTGTTTTCCATTTGCTTCACTGTCTGTCTCAGTGTCAGCATCAACGTGATCCCTTTCAAGTCCGATGTTCGTGCTGGCAATGCTTGCAACAACACAGCAGACCTGACCACTTTTAACAACACCTGGACCACTTTCCACGGCCTCCTCCAAGGTTGTGCTGTTGGATGTGTGGGAAAGGAAGACTGTGTCGTTGATTGCATTGTTAAAAAGATTGGTTTGACCCAACCTTGTGCCCAATGCTTCGGGGACGATGCTGCTTGCACTCAGAAACACTGCACCTTCCAATGCTTGAACCCCGCCTCCCCCGGCTGCGTTGCGTGCTCCAAGAAGTTCTGCCTTGGCCCTCTGGTCGATTGTGCTGGAGTTCCTGCTGACAAGCTTCCACAATA

Fln Alignment:

Contig25769___CNNTADLTTFNNTWTTFHGLLQGCA-VGCVGKEDCVVDCIVKKIGLTQPCAQCFGDDAACTQKHCTFQCL---------NPASPG---------CVACSKKFCLGPLVDCAGVPADKL
B7G7P5_______________CSNPADIETYVETRKTIAKQAKKCGKISMLGSYEELVACLDDKIGFTEDCTKCWADNMISTGKQCLFTCMVTMFTGFMSNNNVPGAGDQGWLNQCLFCDEKLSGPAFVTCSGVARRRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain