SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25699

Length: 415 nt

UniGene Fasta

>sp_v3.0_unigene25699
CCAAACAATCGCTTTCGAATGGCGTGGAAAACCCCTTCTTGTTCGTCACCGTGAAGATTGGGAAATCGATGATGCTCGCAAAGCCCCAATGTCTTCTCTCAAAGACCCACAAACTGACGAAGCCCGCGTTCAGAAACCAGAGTACTTAGTAGTCCTTGGAATTTGCACACATTTAGGATGCGTACCAATCGCAGGAGCAGGACACTACAAAGGATTTTTCTGTCCTTGCCACGGATCTCACTATGACACAAGCGCAAGAATCAGAGAAGGACCGGCACCTCTCAATCTTGAAGTTCCTCCGTATCATTTCATGCCTAATCAAGATAATGTCATTTTAGTAGGTGTTGGCAAAGACGACATACTAAAAAATCGCTGGTCTTAGTTTTAGTTAAAATAAATATTCAGCTTCGATACG

Ace file of the UniGene sp_v3.0_unigene25699

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome bc1 complex subunit Rieske putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W758_9STRA	-	-	9.99967e-42	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Ubiquinol-cytochrome c reductase iron-sulfur subunit	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquinol--cytochrome-c reductase.	EC:1.10.2.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	At5g13430; At5g13440; CHLREDRAFT_109194; CHLREDRAFT_129128; FES1; GSVIVT00006205001; GSVIVT00037959001; H0209H04.2; MA4_111B14.50; MICPUCDRAFT_37463; MICPUN_94567; OSJNBa0039C07.12; OSJNBa0047A17.2; OSJNBb0003H22.14; OSTLU_36665; OSTLU_41673; Os02g0520800

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Ubiquinol cytochrome reductase, transmembrane domain	IPR004192	-	-
Sma3	Rieske iron-sulphur protein, C-terminal	IPR005805	-	-
Sma3		IPR005806	-	-
Sma3	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	IPR006317	-	-
Sma3	Rieske iron-sulphur protein	IPR014349	-	-
Sma3	Ubiquinol-cytochrome c reductase 8kDa, N-terminal	IPR015248	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit chr5:4305414-4307399 REVERSE LENGTH=272	9.94922e-44	55%
RefSeq	Arabidopsis thaliana	NP_568288.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit [Arabidopsis thaliana]	2.00386e-43	55%
RefSeq	Populus trichocarpa	XP_002297879.1	predicted protein [Populus trichocarpa]	2.94273e-44	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMH0

Fln msg: your sequence is shorter than subject: 127 - 245

Fln protein: QTIAFEWRGKPLLVRHREDWEIDDARKAPMSSLKDPQTDEARVQKPEYLVVLGICTHLGCVPIAGAGHYKGFFCPCHGSHYDTSARIREGPAPLNLEVPPYHFMPNQDNVILVGVGKDDILKNRWS*

Protein Length: 128

Fln nts: CCAAACAATCGCTTTCGAATGGCGTGGAAAACCCCTTCTTGTTCGTCACCGTGAAGATTGGGAAATCGATGATGCTCGCAAAGCCCCAATGTCTTCTCTCAAAGACCCACAAACTGACGAAGCCCGCGTTCAGAAACCAGAGTACTTAGTAGTCCTTGGAATTTGCACACATTTAGGATGCGTACCAATCGCAGGAGCAGGACACTACAAAGGATTTTTCTGTCCTTGCCACGGATCTCACTATGACACAAGCGCAAGAATCAGAGAAGGACCGGCACCTCTCAATCTTGAAGTTCCTCCGTATCATTTCATGCCTAATCAAGATAATGTCATTTTAGTAGGTGTTGGCAAAGACGACATACTAAAAAATCGCTGGTCTTAG___TTTTAGTTAAAATAAATATTCAGCTTCGATACG

Fln Alignment:

Contig25699___TIAFEWRGKPLLVRHREDWEIDDARKAPMSSLKDPQTDEARVQKPEYLVVLGICTHLGCVPI
B8LMH0_______________TVTVKWRGKPVFIRRRTEDDIQLANSVNVNSLRDPQEDSARVLNPEWLVVVGVCTHLGCVPL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
387	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain