SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25547

Length: 1387 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene25547

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L26-2 n=2 Tax=Arabidopsis RepID=RL262_ARATH	-	-	2.0e-37	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67510.1	Translation protein SH3-like family protein chr5:26937970-26938410 REVERSE LENGTH=146	87%
RefSeq	Arabidopsis thaliana	NP_201552.1	60S ribosomal protein L26-2 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002304321.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUP7

Fln msg:

Fln protein: MKYNPRVSSSRRKSRKAHFTAPSSVRRILMSAPLSSDLRNKYNVRSIPIRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHVERITREKVNGTTVNVGVHPSKVVVTKLKLDKDRKSLLERKGKGRAAEKGKGKFTAEDVAQPLQDVD*

Protein Length: 149

Fln nts: TAGATTTTAAGTTTGACCAAATTCTTATTCATGTAAGAAATAGAGGTAAAAAAAAGAAGAAAAAGCAGCAGCTCATTAGGTGTTTTATTTACATGATCATTTTCTCGTCACACAAAGATGTATTGATGTGCTATGAAGTCATAAACCAAGGCGTCAACTAGGGTTTTAGTCTTTAGGGCTTTTAAGGGCAGAGAGTGGAAGCGAGGCGCCCGGAGGGAGGAGAGTGACGAGAGACAGTTGCAGGCGGCCCAAAACAACCTTCAAT_-_ATGAAGTACAATCCAAGAGTCAGTAGCTCTAGGAGAAAGAGCCGGAAGGCACATTTTACTGCCCCATCTAGTGTCCGGCGTATTTTGATGAGTGCTCCGCTTTCTTCTGATCTGAGGAACAAGTATAATGTTCGTTCTATCCCAATTAGAAAGGATGATGAAGTTCAGGTTGTGCGAGGAACGTTCAAGGGAAGAGAGGGCAAAGTTGTTCAAGTTTATCGTAAGAAGTGGGTCATCCATGTTGAGCGCATTACTCGGGAGAAAGTCAATGGTACAACTGTGAATGTTGGTGTTCACCCATCCAAGGTTGTTGTGACAAAGTTGAAACTGGATAAGGATAGAAAATCTCTCTTGGAGAGAAAAGGAAAAGGAAGAGCTGCAGAGAAAGGGAAGGGTAAATTTACAGCAGAGGATGTTGCTCAACCTCTTCAGGATGTTGATTAA___ATTTTGTCTTCTCGATGACATGCCAGTTGTAGGCTATAGTGCAGAGTGGGACTAAAATTATGGTGAAATGTTTTTGGTCATAATTGTATTGAACTTGATTAGTCTAGAGAACCTTTTCAATCTTTAATATTTGCTTCCATTGTTTCTTGAGCATGTTCATGTTCCAAGTTGGAACGTTCGTTCACCGGAGATTCCTTTTATGCTATTTTCTTTTTCTAATGGAAAGTCTGTTGTAGAGAATTTTAAAATTCCTAAGAAATGAATGCTTTAATTGCATCAAAACTTTTAAAGAATGTTTCCAAGCTTTGGACTCTATTTTGATTCCTAATATGGAAAAAGGAAGAAGCCAATTGTCTGTAACAAACTAGGGTGTTTTTGAAGGCCAAATTATCAGTTCATGAGTTTGGCAATGCGGTATGAGGTGTTCAATTGGTGAGCTTCCCCAAGGTATATGGGGCATCAATTTACTTGTTTGGATTTTCAGCGAGACTGGGAGCTAAAATTGAGTGTTTATTGCAATTAGTCGTAATTGTAACATATCAAAAGTCAGCAGTTGTTCAGAAATGTCCATGAACACCGATTTTGTTTGCTAGGTGCCTGTAGGACCACGTTTATTATGCAATACTGTATTGCTGATTGATTGCTTTATTATTAGTTATTTTCGAGATTCAGCAGTGA

Fln Alignment:

Contig25547___MKYNPXXXXXXXXXXXAHFTAPSSVRRILMSAPLSSDLRNKYNVRSIPIRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHVERITREKVNGTTVNVGVHPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAEDVAQPLQDVD
A9NUP7_______________MKYNPRVSSSRRKSRKAHFTAPSSVRRILMSAPLSSDLRNKHNVRSIPIRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHVERITREKVNGQTVNVGVHPSKVIVTKLKIDKDRKDLLERKGKGRAAEKGKGKFTADDVAQPLQDVD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1125		16		83	0.999991
1180	12		87		0.992554
1227	83	16			0.994512
1229	20			80	0.995493
1230	20			80	0.995493
1232	20		80		0.995493
1233	20			80	0.995493
1245		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain