SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25542

Length: 539 nt

UniGene Fasta

>sp_v3.0_unigene25542
CTCCCAAAAAACACAGAAGCAGGCTGCAAGGAAACAACGCACTGCTGCTCCTGTAATCCATTGCCATGGCACTGGCGTCGACCTTGTCGTATTGCTCTCGTGCCCCTCTCGCACATGAAGTTTTTGGCCGCCATGGCTTTCTTACCCATTTTTCCTCATCTCTTTCATTCCCCAATTCGATACAATGGACAGGAAGTAAAAGAAGAAGAAGGACAAGTGTTTGTGTAAATTCGAATTCACAACTGATTGCAATGGACTCTGCTCGAATCAAAGTCGTGGGAATTGGCGGAGGAGGAAACAATGCTGTCGATCGAATGATTCGAGGCAGACTCCAGGGAGTTGAATTTTATGCCATAAATACAGATGCTCAAGCCCTGCTACAGTCAGCTGCAGATGAACGTATTCAAATCGGAGAGCAGCTGACTCGTGGACTAGGTACGGGGGGGAATCCAGAACTTGGGGAACGGGCTGCAGAAGAATCAAAAGATGCTATTGGTAGAATTCTTGCAGAGTCTGATCTAGTATTTATTGCAGCTGGA

Ace file of the UniGene sp_v3.0_unigene25542

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[D] COG0206 Cell division GTPase	-	-	8.0e-25	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Plastid division protein FtsZ	-	-	1.369e-19	-

Source	Gene names
Sma3	At2g36250; At3g52750; At5g55280; AtFtsZ2-1; CHLREDRAFT_132433; CHLREDRAFT_140409; CcftsZ; CmftsZ1; CpFtsZ-cy; F3C22_150; FTSZ; FTSZ1; FTSZ2; FtsZ; FtsZ1; GSVIVT00027244001; GsftsZ2; H1005F08.7; LOC_Os03g44420; LlFtsZ; MCO15.23; MICPUCDRAFT_17294; MICPUCDR

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	barrier septum assembly	GO:0000917	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	microtubule-based process	GO:0007017	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	chloroplast fission	GO:0010020	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cell division protein FtsZ	IPR000158	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Phosphatidylethanolamine-binding protein PEBP	IPR008914	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55280.1	FTSZ1-1, ATFTSZ1-1, CPFTSZ homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 chr5:22420740-22422527 REVERSE LENGTH=433	4.0e-35	57%
RefSeq	Arabidopsis thaliana	NP_200339.1	cell division protein ftsZ-like protein [Arabidopsis thaliana]	5.0e-35	57%
RefSeq	Populus trichocarpa	XP_002300342.1	predicted protein [Populus trichocarpa]	2.0e-36	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVJ2

Fln msg: Distance to subject end: 257 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 158 - 439

Fln protein: MALASTLSYCSRAPLAHEVFGRHGFLTHFSSSLSFPNSIQWTGSKRRRRTSVCVNSNSQLIAMDSARIKVVGIGGGGNNAVDRMIRGRLQGVEFYAINTDAQALLQSAADERIQIGEQLTRGLGTGGNPELGERAAEESKDAIGRILAESDLVFIAAG

Protein Length: 159

Fln nts: CTCCCAAAAAACACAGAAGCAGGCTGCAAGGAAACAACGCACTGCTGCTCCTGTAATCCATTGCC_-_ATGGCACTGGCGTCGACCTTGTCGTATTGCTCTCGTGCCCCTCTCGCACATGAAGTTTTTGGCCGCCATGGCTTTCTTACCCATTTTTCCTCATCTCTTTCATTCCCCAATTCGATACAATGGACAGGAAGTAAAAGAAGAAGAAGGACAAGTGTTTGTGTAAATTCGAATTCACAACTGATTGCAATGGACTCTGCTCGAATCAAAGTCGTGGGAATTGGCGGAGGAGGAAACAATGCTGTCGATCGAATGATTCGAGGCAGACTCCAGGGAGTTGAATTTTATGCCATAAATACAGATGCTCAAGCCCTGCTACAGTCAGCTGCAGATGAACGTATTCAAATCGGAGAGCAGCTGACTCGTGGACTAGGTACGGGGGGGAATCCAGAACTTGGGGAACGGGCTGCAGAAGAATCAAAAGATGCTATTGGTAGAATTCTTGCAGAGTCTGATCTAGTATTTATTGCAGCTGGA

Fln Alignment:

Contig25542___YCS-RAPLAHEVFGRHGFLTHFSSSLSFPNSIQWT------------------GSKRRRRTSVCVNSNSQLIAMDSARIKVVXXXXXXNNAVDRMIRGRLQGVEFYAINTDAQALLQSAADERIQIGEQLTRGLGTGGNPELGERAAEESKDAIGRILAESDLVFIAAG
A9NVJ2_______________YCNVRSSPSSVQFGRS--LAPFSGGMAANTAVSWSSQFRVGKLFHSEVARNGGGSKVRR---VCRSSYSPFRQMESARIKVVGIGGGGNNAVNRMIAAGLHGVEFYAINTDAQALLQSAAENPVQIGEQLTRGLGTGGNPELGEQAAEESKEAIVECLKESDLVFITAG

SSRs (tot: 1)

Start position	End position	Sequence	Length
200	211	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain