SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25498

Length: 1902 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene25498 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Sma3	Expressed protein, having alternative splicing products	-	-	6.797e-09	-

Source	Gene names
Sma3	At1g27110; At1g27150; GSVIVT00028962001; LOC_Os03g48380; OSJNBa0022C08.8; Os03g0689900; OsI_13087; OsJ_12169; PHYPADRAFT_192071; POPTRDRAFT_565411; RCOM_0698990;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G27150.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr1:9429177-9432068 FORWARD LENGTH=468	51%
RefSeq	Arabidopsis thaliana	NP_564271.1	StaR-like protein domain-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002311871.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TNG4

Fln msg:

Fln protein: MAGSIDCDHQHEYKLDRWGYPINTKSNACILHINSYCEQVLSYGAKRDVITRATQEDGDCVLANTLAALTLVDKRPSDAASHLHAAERKLEVATVYEQMVFNAVSSLINGGDVETTIDLHFKLLKDFPKDLVSLKRAQVLCFYIGRPDLSLQLVEQVLPANQGENYIYGMLSFSLLEVGRMGDAELASRKGLTIKSDDPWSQHALCHVFQHECRFKEAVQFMKTCLDSWNACCSFMYTHNWWHLALCYLEGHAHLSKVLHIYDSHILASLQRENVNPSQVYLNALGLLLNIHVHGHSGIIDDRMRDLSYHLLDQSLWHQEWLLDLLAVWALTFTNKFSQADQLLEDMKCRVNEMRGKKRQSMQRVLLLAEALYHYGKSDYSRAYNILGPNFNVCEYKVIGASDEQLDVFDNVWCIILLNSGHISEAIEALERKVAIRSGVPLTWRFLEKAYSREGGEPLKIAREKAKALEETYFTEED*

Protein Length: 480

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTTAGATTATTCGTTCCACGGTGGAGCGTTTTTCTTTGTCACGATTGTCTGATCCATTGCTCAGTGGTGCCTCCAAGCAGTCGCTTTGGGAACAGGGTAACAGAAGTTAATATCGAAAATTGTCGGATGCGTTGTCTCTGTTTGTGATTTGGTAGAAGATA_-_ATGGCGGGGAGTATTGATTGTGATCATCAACATGAATACAAATTGGATCGATGGGGTTATCCCATTAACACCAAATCAAATGCGTGCATTCTGCACATCAATTCTTACTGCGAGCAGGTTCTGAGTTATGGAGCAAAAAGGGATGTCATTACGAGAGCAACGCAGGAGGACGGCGACTGCGTGTTAGCCAACACTTTGGCCGCCTTAACTTTAGTTGACAAGAGGCCCTCAGATGCTGCTTCTCATCTCCATGCCGCCGAAAGGAAACTGGAGGTGGCAACTGTTTACGAGCAGATGGTGTTCAATGCGGTCTCGAGTTTAATTAATGGAGGGGATGTAGAAACTACAATCGATTTGCATTTTAAGCTCCTGAAGGACTTCCCAAAGGATTTGGTGTCACTGAAAAGAGCCCAGGTGCTTTGCTTTTACATTGGCCGACCTGATCTTTCTCTTCAGCTTGTAGAGCAGGTTTTGCCAGCAAATCAAGGTGAAAACTATATATATGGAATGCTTTCATTTTCTTTACTGGAGGTTGGGCGAATGGGGGATGCAGAATTGGCTTCAAGGAAAGGCTTGACAATCAAAAGTGACGACCCATGGTCTCAGCATGCGCTATGTCATGTGTTTCAGCATGAATGTCGCTTTAAGGAGGCAGTCCAATTTATGAAAACGTGTTTGGATTCATGGAATGCTTGCTGTTCATTCATGTATACTCACAATTGGTGGCATCTAGCATTATGTTACTTGGAAGGCCACGCACATTTGAGTAAAGTGCTCCATATATATGACTCCCATATCTTGGCTTCTTTGCAAAGAGAGAATGTTAATCCTTCACAGGTTTACTTGAATGCTCTAGGGTTGCTGTTGAATATTCATGTGCATGGACATTCTGGTATTATTGATGATAGAATGAGAGACCTTTCATATCACCTTCTGGATCAATCATTATGGCACCAAGAATGGCTCCTAGATCTTTTGGCAGTATGGGCACTTACATTTACTAATAAGTTTTCTCAAGCAGATCAGTTGCTTGAGGACATGAAATGCAGGGTTAATGAAATGAGAGGAAAGAAGAGACAAAGTATGCAAAGAGTACTACTGCTTGCAGAAGCCTTGTATCACTATGGAAAGAGTGATTACAGTCGGGCATATAACATCCTTGGACCAAATTTTAATGTGTGCGAATACAAGGTGATTGGAGCATCTGATGAACAACTTGATGTATTCGATAATGTGTGGTGTATCATTTTACTCAACTCGGGTCATATTTCAGAAGCGATAGAGGCATTAGAACGCAAAGTAGCAATAAGGAGTGGAGTCCCCCTAACATGGCGCTTCTTGGAGAAGGCATACTCAAGAGAGGGAGGGGAGCCGTTGAAAATTGCCAGAGAAAAAGCCAAAGCTCTGGAAGAAACATACTTTACAGAAGAGGACTAA___GTTACGATTGTTGTATAACATAATATTATTAGAAAATGCTTTATATTTTTTTACTCAATAAACACTCTGGGCAATATCTCATTGCCATTCTTGCTTCAATTTTTATCTTTACCTGATTATTACATTTCCGTGATGCTGTTGTTAAGATGCAATTTAGCTTCAAGTTCAATATTTGAGAATTTAAGAGAATGCCTCCATGGTATGAAATGTATGTGATGAGCTTATCTTTAAAAGTACATCTGGTTTTCATATTTATATACAAGGGAGTGGATACACG

Fln Alignment:

Contig25498___EYKLDRWGYPINTKSNACILHINSYCEQVLSYGAKRDVITRATQEDGDCVXXXXXXXXXLVDKRPSDAASHLHAAERKLEVATVYEQMVFNAVSSLINGG-DVETTIDLHFKLLKDFPKDLVSLKRAQVLCFYIGRPDLSLQLVEQVLPANQGENYIYGMLSFSLLEVGRMGDAELASRKGLTIKSDDPWSQHALCHVFQHECRFKEAVQFMKTCLDSWNACCSFMYTHNWWHLALCYLEGHAHLSKVLHIYDSHILASLQRENVNPSQVYLNALGLLLNIHVHGHSGIIDDRMRDLSYHLLDQSLWHQEWLLDLLAVWALTFTNKFSQADQLLEDMKCRVNEMRGKKRQSMQRVLLLAEALYHYGKSDYSRAYNILGPNFNVCEYKVIGASDEQLDVFDNVWCIILLNSGHISEAIEALERKVAIRSGVPLTWRFLEKAYSREGGEPLKIAREKAKALEETYF
D7TNG4_______________EVKVDKWGYEVNTSSDACISAINAYYHQLLIYGRERSVILEAPLRDQHCVLANILAAHFLCSADPSRAPLHIQAAKSRLQQASAYEKAVFDAVSCLISQDRDDDLALELHSKLLKDFPRDLVSLKRAQVFCFYMGRPDLSFNLVQQVLHENQNENYIYGMLAFSLLECGQMVDAEKAAKRGFEINKQDCWSQHALCHVLQYECRFKEAVEFMEECSSSWSLCSSFMLTHNWWHVSLCYLEGHSSIRKVLEVYDNYIWKELERPDAASAEVYLNALGLLLRVYVRGHAVVFEDRLKTLVSRLTDQSTWYIEWHLDLLTIWALASTGELVKTEALLQGLKSRLSRMSKKKQQTMQRGILLAEALYEYGRGNHIRALELLGPDFNANHCKMIGASDEQLDVFNELWYSMLLSTGQATKAIEVIEKQVKNREGVPFLWRLLERGYSMTGKQEARVAGEKAMALETSYF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
337		50		50	1.0
442		40	60		1.0
471	50		50		1.0
513	25		75		0.996473
1124	50		50		1.0
1171		80		20	0.995493
1193	85			14	0.993533
1377	33			66	0.997452
1627	20			80	0.995493
1840	90		10		0.90298
1841	90	10			0.90298
1842		10	90		0.90298
1845	88		11		0.923564
1846	88		11		0.923564
1847	77			11	0.968132
1849	11		88		0.923564
1850	11	88			0.923564
1851			11	88	0.923564
1852	11	77	11		0.968132
1854	88		11		0.923564
1857	12		87		0.992554
1858	12			87	0.992554
1861	87			12	0.992554
1866	87	12			0.992554
1867			14	85	0.993533
1878	25	75			0.996473
1879		33		66	0.997452
1880		33	66		0.997452
1881	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain