SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25359

Length: 2125 nt

UniGene Fasta

>sp_v3.0_unigene25359
TCCATGACTTTATGGGTAAGGAAAATAAGTGGCATAATGCTCGATCGTGACAGCGGGGAGATAGGCGGTCGCTCGAGTTCTTTCACAGCTCTTATTTGTTCCTATTCAAGAGCACCAATGCAAATGGCTGTGCAGGGTAAACTCTATTTTTGTCGATGCATTTTTCCTGAAAGCCTTGTTTCTCGGACCCTGTAAAGTAGCTGCCCACTGTTGCAAGTATTTGAACAAAAGGTACTCTGGTGTAAATTGGAGCTGTTTGGCTTGCCTTGAACTTCCAGTTGTAGATGCTTGAGATGACTTGGATATGTAAACCATAGTTCTTCTGAAGAAGCTTGCAGCGTTCACAGTTAAGTTGAAATCTGATAGTGCTCGCGTGCACCTGAAATGGACATATCTGTAAAAGAGAATGGGACGGAGGAGCCTCTCTTGTCTAATCTTTCAGATCAGCACAAGCAGTCAAGCAAGAACAGAGCTCAAATACACCGTTGTAAAAGTGCTCCTGCACATACTTTAATTCAATCAAAAAAAGAGCCAAACAATGTGCCATCCAAATCGCTTTTCAAAACCCAGAACAATCGTCCTACACTTAATCAAGCTGGTTTAATTCTCACCATTTACTTGGGTGTGGGAATGATCTGCTTTTACAGTGTAAGGCAGGAACTGAAAGGTCTGAAGACAAGCAGGCTGGTTGATGCTTTATATTTCTGCGTTGTAACAATGACTACTGTTGGTTATGGAGACCTTGTGCCTCAGGGTGTTCTTGCTAAGCTTTTCGCTTGTGTCTTTGTCTTTTCTGGAATGGCCCTTGTGGGTTTGCTTCTCAGCAGTGCAGCAGACTACCTCGTTGAGAAGCAGGAGAGGTTATTGATTAAGGCCTTTCATGCTCGTCAAAGCCATGGCCTAGATGAGTTTGCTAATGGAATTCAAACTCACAAAGCACAGTGGAAGCTATTAGCATCTTTGGTGATCCTTCTGGCACTGATTGTGGTTGGTATGGTTGTCTTGCATGAGTTTGAGGGTTTGGATTTCCTCAATTCATTTTATTGTGTTTGCTCAACCATTACAACTTTAGGATATGGAGATCAAAGCTTTTCAACAGAAGGGGGGCGCATCTTTGCTATTATTTGGATCTTGGTCAGTACTGTATGTCTTGCTCAGTGCTTTTTGTATCTTGCTGAGGCAAGAACTGAAGGCAGGCAGCAGTCGTTGGTGCATTGGGTTATTACCCGCAAGACTACTGTCACAGACCTTGAAGCAGCAGATATGGATTCTGATGGAGTTGTGAGCGCTGCAGAATTTGTTATTTATAAGTTGAAAGAGATGGGGAAGATTGGAGAGGAAGATGTGGCACTTGTATTGAAAGAGTTTGATTATCTTGATGCAGACCACTCGGGTTCACTGACAGTATCTGACTTGAACATTGCACAACAAGAACCGGAAAATTGAGGAAAGACTACAGGCAGTAAAATTGGCAATCTAGGATTTGCTTACTAATGTAGAATGACTTTTTGGTATTCTTTTGGTATCTCAGATTGTGATAACTTATTACAAATCCAGGGAGTGCTGCGAACAACAAATCAAGGAATTGCAAGGCTAAAACTGATATATAAGCTCTTTGATATCACCACGGCTTTTTAATTACCGAACTTTCCTCTATTAGGCATTGGCCCAATTGAAAGTGATATCTACAAAATCTTCAACTTTGTATCTTCTTTTCAGTATTAGGAATGTCTTGCATGAGCTTTATCTCTAAGCTCTTTGAAAGTTTGATGTACATCTAGTTCCAAATTCCAAACAGAGCAAATGACTATGCAGTACTGATACTTACTAGTTGTTACTAGATATGTGTCATATCAACATTGTTAGAGTTCGAACAGCTGACTTAGATGCCTGGCATTTTCAGGGTTGTAGCATAGTATTAAGTGAAAGAAAAGACTCTTCTCTAGTAGTTACGTAGTGCATTGGAGAATAACCATTTTGGAATTTTGAAGCATTTTGATAATGACCTATCACAAGTCATCCGGATGATGTATGTAGTATAGAATTTCAATTTGATGAAAAACTTATCTGGTGACTTTTTCTTTAGTTTCTAATTTCATACTCACTGAAGCTTTTGTAAACTTGT

Ace file of the UniGene sp_v3.0_unigene25359

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Outward-rectifying potassium channel KCO1 n=1 Tax=Eucalyptus camaldulensis RepID=Q9LLM5_EUCCA	-	-	0.0	54%
FL-Next	sp=Two-pore potassium channel 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Sma3	Outward rectifying potassium channel	-	-	2.45e-16	-

Source	Gene names
Sma3	At5g55630; GSVIVT00012016001; GSVIVT00012883001; GSVIVT00033356001; GSVIVT00033357001; GSVIVT00033358001; KCO1; LOC_Os03g54100; MDF20.7; NtTPK1; OJ1112_G08.7; OJ1567_G09.108; OSJNBa0032E21.10; OSJNBa0047E24.7; Os03g0752300; Os07g0108800; OsI_13533; OsI_24

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium channel activity	GO:0005267	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	regulation of seed germination	GO:0010029	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	protein homooligomerization	GO:0051260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Two pore domain potassium channel	IPR003280	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Ion transport 2	IPR013099	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55630.1	KCO1, TPK1, ATKCO1, ATTPK1 Outward rectifying potassium channel protein chr5:22531718-22532893 FORWARD LENGTH=363	52%
RefSeq	Arabidopsis thaliana	NP_851196.1	calcium-activated outward-rectifying potassium channel 1 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002310924.1	outward rectifying potassium channel [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LBL1

Fln msg:

Fln protein: MDISVKENGTEEPLLSNLSDQHKQSSKNRAQIHRCKSAPAHTLIQSKKEPNNVPSKSLFKTQNNRPTLNQAGLILTIYLGVGMICFYSVRQELKGLKTSRLVDALYFCVVTMTTVGYGDLVPQGVLAKLFACVFVFSGMALVGLLLSSAADYLVEKQERLLIKAFHARQSHGLDEFANGIQTHKAQWKLLASLVILLALIVVGMVVLHEFEGLDFLNSFYCVCSTITTLGYGDQSFSTEGGRIFAIIWILVSTVCLAQCFLYLAEARTEGRQQSLVHWVITRKTTVTDLEAADMDSDGVVSAAEFVIYKLKEMGKIGEEDVALVLKEFDYLDADHSGSLTVSDLNIAQQEPEN*

Protein Length: 355

Fln nts: TCCATGACTTTATGGGTAAGGAAAATAAGTGGCATAATGCTCGATCGTGACAGCGGGGAGATAGGCGGTCGCTCGAGTTCTTTCACAGCTCTTATTTGTTCCTATTCAAGAGCACCAATGCAAATGGCTGTGCAGGGTAAACTCTATTTTTGTCGATGCATTTTTCCTGAAAGCCTTGTTTCTCGGACCCTGTAAAGTAGCTGCCCACTGTTGCAAGTATTTGAACAAAAGGTACTCTGGTGTAAATTGGAGCTGTTTGGCTTGCCTTGAACTTCCAGTTGTAGATGCTTGAGATGACTTGGATATGTAAACCATAGTTCTTCTGAAGAAGCTTGCAGCGTTCACAGTTAAGTTGAAATCTGATAGTGCTCGCGTGCACCTGAA_-_ATGGACATATCTGTAAAAGAGAATGGGACGGAGGAGCCTCTCTTGTCTAATCTTTCAGATCAGCACAAGCAGTCAAGCAAGAACAGAGCTCAAATACACCGTTGTAAAAGTGCTCCTGCACATACTTTAATTCAATCAAAAAAAGAGCCAAACAATGTGCCATCCAAATCGCTTTTCAAAACCCAGAACAATCGTCCTACACTTAATCAAGCTGGTTTAATTCTCACCATTTACTTGGGTGTGGGAATGATCTGCTTTTACAGTGTAAGGCAGGAACTGAAAGGTCTGAAGACAAGCAGGCTGGTTGATGCTTTATATTTCTGCGTTGTAACAATGACTACTGTTGGTTATGGAGACCTTGTGCCTCAGGGTGTTCTTGCTAAGCTTTTCGCTTGTGTCTTTGTCTTTTCTGGAATGGCCCTTGTGGGTTTGCTTCTCAGCAGTGCAGCAGACTACCTCGTTGAGAAGCAGGAGAGGTTATTGATTAAGGCCTTTCATGCTCGTCAAAGCCATGGCCTAGATGAGTTTGCTAATGGAATTCAAACTCACAAAGCACAGTGGAAGCTATTAGCATCTTTGGTGATCCTTCTGGCACTGATTGTGGTTGGTATGGTTGTCTTGCATGAGTTTGAGGGTTTGGATTTCCTCAATTCATTTTATTGTGTTTGCTCAACCATTACAACTTTAGGATATGGAGATCAAAGCTTTTCAACAGAAGGGGGGCGCATCTTTGCTATTATTTGGATCTTGGTCAGTACTGTATGTCTTGCTCAGTGCTTTTTGTATCTTGCTGAGGCAAGAACTGAAGGCAGGCAGCAGTCGTTGGTGCATTGGGTTATTACCCGCAAGACTACTGTCACAGACCTTGAAGCAGCAGATATGGATTCTGATGGAGTTGTGAGCGCTGCAGAATTTGTTATTTATAAGTTGAAAGAGATGGGGAAGATTGGAGAGGAAGATGTGGCACTTGTATTGAAAGAGTTTGATTATCTTGATGCAGACCACTCGGGTTCACTGACAGTATCTGACTTGAACATTGCACAACAAGAACCGGAAAATTGA___GGAAAGACTACAGGCAGTAAAATTGGCAATCTAGGATTTGCTTACTAATGTAGAATGACTTTTTGGTATTCTTTTGGTATCTCAGATTGTGATAACTTATTACAAATCCAGGGAGTGCTGCGAACAACAAATCAAGGAATTGCAAGGCTAAAACTGATATATAAGCTCTTTGATATCACCACGGCTTTTTAATTACCGAACTTTCCTCTATTAGGCATTGGCCCAATTGAAAGTGATATCTACAAAATCTTCAACTTTGTATCTTCTTTTCAGTATTAGGAATGTCTTGCATGAGCTTTATCTCTAAGCTCTTTGAAAGTTTGATGTACATCTAGTTCCAAATTCCAAACAGAGCAAATGACTATGCAGTACTGATACTTACTAGTTGTTACTAGATATGTGTCATATCAACATTGTTAGAGTTCGAACAGCTGACTTAGATGCCTGGCATTTTCAGGGTTGTAGCATAGTATTAAGTGAAAGAAAAGACTCTTCTCTAGTAGTTACGTAGTGCATTGGAGAATAACCATTTTGGAATTTTGAAGCATTTTGATAATGACCTATCACAAGTCATCCGGATGATGTATGTAGTATAGAATTTCAATTTGATGAAAAACTTATCTGGTGACTTTTTCTTTAGTTTCTAATTTCATACTCACTGAAGCTTTTGTAAACTTGT

Fln Alignment:

Contig25359___KQSSKNRAQIHRCKSAPAHTLIQSKK----EPNNVPSK-SLFKTQNNRPTLNQAGLILTIYLGVGMICFYSVRQELKGLKTSRLVDALYFCVVTMTTVGYGDLVPQGVLAKLFACVFVFSGMALVGLLLSSAADYLVEKQERLLIKAFHARQSHGLDEFANGIQTHKAQWKXXXXXXXXXXXXXXXXXXXHEFEGLDFLNSFYCVCSTITTLGYGDQSFSTEGGRIFAIIWILVSTVCLAQCFLYLAEARTEGRQQSLVHWVITRKTTVTDLEAADMDSDGVVSAAEFVIYKLKEMGKIGEEDVALVLKEFDYLDADHSGSLTVSDLNIAQ
Q8LBL1_______________RTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLN--PNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRRITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTSDIVLAQ

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
418	26		73		1.0
439			13	86	0.999973
489	35		64		1.0
510	58		41		1.0
560		33		66	1.0
598	33		66		1.0
869	11			88	0.923564
969		11		88	0.923564
1079		10		90	0.90298
1104	80		20		0.995493
1291		87		12	0.992554
1463		14	85		0.993533
1464	14		85		0.993533
1465		71		28	1.0
1466	83			16	0.994512
1639		12		87	0.992554
1792	22	77			0.999999
1953	28		71		1.0
1954	28			71	1.0
1955		28		71	1.0
1975	40		60		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain