SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25256

Length: 1872 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene25256

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CCAAT-binding transcription factor [Oryza sativa Japonica Group]	-	-	5.0e-40	49%
FL-Next	sp=Nuclear transcription factor Y subunit A-7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Nuclear transcription factor Y subunit A-3	-	-	1.432e-16	-

Source	Gene names
Sma3	AT5G12840; At1g17590; At1g30500; At1g54160; At1g72830; At2g34720; At3g14020; At3g20910; At5g12840; C-HAP2B; CBF-A22; EMB2220; F15I1.26; F26G16.12; GSVIVT00024601001; GSVIVT00025563001; GSVIVT00028796001; HAP2.1; HAP2A; HAP2C; LOC_Os03g07880; LOC_Os03g2976

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3		GO:0032582	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30500.2	NF-YA7 nuclear factor Y, subunit A7 chr1:10804736-10805896 REVERSE LENGTH=190	1.4013e-45	64%
RefSeq	Arabidopsis thaliana	NP_849733.1	nuclear transcription factor Y subunit A-7 [Arabidopsis thaliana]	1.4013e-45	64%
RefSeq	Populus trichocarpa	XP_002332527.1	predicted protein [Populus trichocarpa]	0.0	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q84JP1

Fln msg:

Fln protein: MENTPTHTVSGIDGSASDEQQPQADPVQQEAPPPGMIPPPAMTLLPPEFVMPHTQLELGQTMVRAAYPYPDPYFGGIVAAYGPQAVIHPHMLGVPHAGVPLPSDAIEEPVYVNAKQYNGILRRRQSRAKAESENKLIKNRKPYLHESRHLHALKRARGCGGRFLNAKKPDEVSQENNSNGSIVLVSSVDKPDAEKKNSSQQNTDS*

Protein Length: 207

Fln nts: GGACTACTTCGATGACGAGCTTCTTTGCTATTTCCCATTGAAATATTAATTATAATATGAAGACACTGATTTTTGATTAATGAAAAAAGACGCGGTATGTTACGTATGTAGATAACTGGAAAGGCTAAGCAAATTTAAAGGCTTTGATTGGAGCTTGGAGGTTCTTCCGTATGCGAAATCTTTCTCTTAATTGGCTGATGTGATCTTACTACCAGGGACCAGCAAAGTCTAGCAGAGGCGGTCAAAGCTTCATAGCTGTTGGCAGTGGACTGTCACATGTGTATAGTGGATCATGGATGAGAGGAAATAGTCTGAGTTCTTTTGGGTTCGCCCTCCTGAAAGCTGGAGAACATTTGGTGACCTTCCGGTGCTTTTAAAATCTGAGTAATCAACTTTATATTCTCTGAAGAAAAAGGCGTGTACAAACAAGTTTTTAAAACA_-_ATGGAGAACACGCCTACACATACTGTTTCAGGCATTGATGGAAGTGCTTCAGACGAGCAGCAACCTCAGGCTGATCCTGTGCAACAGGAGGCTCCGCCACCTGGCATGATACCGCCACCTGCCATGACTTTGCTACCTCCTGAATTTGTGATGCCACACACTCAACTCGAACTAGGACAAACAATGGTGAGAGCTGCATATCCTTATCCAGATCCCTACTTTGGAGGCATTGTTGCAGCATATGGTCCACAAGCTGTGATTCATCCCCATATGTTAGGGGTTCCCCATGCTGGTGTTCCATTGCCATCAGATGCAATTGAGGAGCCTGTATATGTCAATGCAAAGCAATATAATGGAATTTTGCGACGTCGACAATCTCGAGCAAAGGCAGAGTCCGAGAACAAACTGATAAAGAACAGAAAGCCTTATCTTCATGAATCTCGACATTTACATGCACTAAAGCGAGCGAGGGGATGTGGAGGTCGGTTTCTCAATGCCAAAAAACCGGATGAGGTGTCACAGGAAAATAATTCGAATGGTAGTATTGTACTTGTATCAAGTGTTGATAAACCTGATGCAGAAAAGAAAAACTCTTCACAGCAGAACACGGATTCCTAG___AGTTCAAAGCAACAATACTGTAGTATGGCTAGGATATGTTGCAGGCAAGAAGCAGTTTTCTTATGGGAACAATTCACCTAATAGGTCAAATAGTAATGACTAAAAATTGTGAAATTGGATGTGTCATAGTGCCAAATCTACATTCCAGCCAGTTTCAGTTTGCAATTCTGAAAGCAGCCCAGTTTAAGGGGATGTTTATTGCAGCAAGTTGTTTCTCAGGCAGGGTATCCAATATCTGCTTATGCCATCGTCATAGTTTTCTATCCAGATTGAAATTTGTTTATTGTGCCTCATAGCTAGAAAGCTAAGATGCTACTTTACTGATTATTCTTTACTTAATTTCAAATAATAATTCTCTATAGGTTAAGCCATAGCCAAGTTACTGAATGGATGACAAATTTCTTGCATTTTGGTAATCAGCAAGGATCATCTGTTGAGCATGGGGTTTTCATTGAGTGGAGATGGTGTCATAAAGTAAATGACAGTGCTCCGTGTACAATTTGATTTTGGATCTGTTGTCCCCTTTAGAAGCTGACCTTTCGGAGCCCCTTGTTTCTAAACTTGGTTAAGTTGTAAACAAATAAACTGTACAGTGTCAATTTTCTTTTAATATCTATTTTGTAGATGCAAGACACGGTTGGACTTGGTCCACATGTATTAAAAAGTGAACATTTTGTGTGCATACAAATTGTTTATGGCATTAACATAACGATCATATTGCCCATGTTTATTGTAAGAGATACCATAACGATCATATTGCCCATGTTTATTGTAAGAGACACCGTAACGATCATATTGCCCATGCTTATTGTA

Fln Alignment:

Contig25256___TMVRAAYPYPDPYFGGIVAAYG-PQAVIHPHMLGVPHAGVPLPSDAIEEPVYVNAKQYNGILRRRQSRAKAESENKLIKNRKPYLHESRHLHALKRARGCGGRFLNAKKPDEVSQENN
Q84JP1_______________SMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
522			88	11	0.923564
554		90		10	0.90298
582		10		90	0.90298
1050	22		77		0.999999
1250	25		75		0.996473
1443		11		88	0.923564
1475	88			11	0.923564
1476	88	11			0.923564
1623			40	60	1.0
1658	25			50	0.995533
1659	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain