SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25239

Length: 1210 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene25239

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl carrier protein n=3 Tax=Picea sitchensis RepID=A9NK69_PICSI	-	-	96%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Acyl carrier protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	acyl carrier activity	GO:0000036	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	phosphopantetheine binding	GO:0031177	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25050.2	ACP4 acyl carrier protein 4 chr4:12870178-12871024 FORWARD LENGTH=149	2.0e-29	56%
RefSeq	Arabidopsis thaliana	NP_194235.1	acyl carrier protein 4 [Arabidopsis thaliana]	1.0e-32	62%
RefSeq	Populus trichocarpa	XP_002328387.1	predicted protein [Populus trichocarpa]	4.0e-34	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK69

Fln msg: your sequence is longer than subject: 219 - 151

Fln protein: MIKTLCLRLDSNPCRVTATFESVTEATFDSVTEAQSLGLNIPPTQEAIRALRLKTLFWFSFSKISAAMAFASASFSVVRVAAAPSWKQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLNKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKITVEEENAGNITTVQEAADLIERLAGVEGSAAEAVKS*

Protein Length: 220

Fln nts: TGTCTTATAAGCTATCTTTAACCTCATTTTCTGTCCTACAAACTGTAAAACACTGAGACTTCACTGTCTGACGATGTCACATTATCTTGAGTCGGCAACTATCGTGTACAGAGATGCGAAGTTTTCACCCAAAATTCTACATGTGATGTCTGACGATGTCACATAATCTTGAGTCGGCAACTATCGTGTACAGAGATGCGAAGTTTTCACCCAAAATTCTACATGTGGTTCATTTCCCTGACTTATCGGA_-_ATGATTAAGACGCTTTGTCTCCGGTTAGATTCGAACCCTTGCCGAGTAACCGCGACCTTTGAAAGCGTGACAGAAGCGACCTTTGACAGCGTGACAGAAGCACAATCCTTGGGTTTGAATATCCCACCTACACAGGAAGCAATTCGGGCGCTGCGTTTAAAAACCCTTTTCTGGTTTTCATTCTCCAAGATTTCGGCAGCAATGGCTTTCGCTTCAGCGAGCTTTTCTGTGGTTCGGGTCGCAGCAGCGCCATCATGGAAACAAAAACAGGTTGTCCCTAGATTCTCTGGACTAAAGGCAGTATCATTTGGACAACAAAGATTTGATTTTCCATCATTTCAATCTTCACAATGCACTTCCGGTGCTTTGAAAGTAGTTTGTGCGGCCAAGCCAGAGACTCTCAACAAAGTATGTGATATTGTGAAGAGTCAGTTAGCATTATCAGATGATAAGCCTTTGACTCCTGAATCCAAATTTTCTGATTTGGGTGCTGATTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCACTGTCGAAGAAGAAAATGCTGGGAACATTACAACTGTTCAGGAAGCAGCCGATTTGATAGAAAGGCTTGCCGGGGTGGAAGGTTCTGCAGCTGAGGCAGTTAAATCTTGA___GCGGTGTATGCGTGTTACCTAAAGGCTATCCAAGTGCACATCTAACGTCATCTGTTAGTCATTGTGGCTTTTTTTCTGGATCCGGTGCACAATGTGTTGGCTCATCCCTGAAGAATAATCCATCGTCTCTTTGAACCTATTGATGCTTAAGAACATTTCAACTGTCTAGTTAATTGATAGTTTTATTTCCCCACGTGGGTTAGCTTATTTTTGTTAATCACTTTTTTCAAAGGCAATAATGAAGTGAAATTTACTACTTAAATCTGATGGCAATTATATCGTGTTTACTGTTGAGTTGTGATC

Fln Alignment:

Contig25239___WKQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLNKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKITVEEENAGNITTVQEAADLIERLAGVEGSAAEAVKS
A9NK69_______________WNQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLSKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERLAGVEGSAGQAVKS

SNPs (tot: 3)

Position	A %	C %	T %	Probability
271	33	66		0.997452
552	16		83	0.994512
734		25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain