SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25143

Length: 1639 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene25143

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gb\|AAK44141.1\|AF370326_1 putative 2-nitropropane dioxygenase [Arabidopsis thaliana] dbj\|BAB09856.1\| 2-nitropropane dioxygenase-like protein [Arabidopsis thaliana] gb\|AAL34288.1\| putative 2-nit	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	2-nitropropane dioxygenase, NPD	IPR004136	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64250.2	Aldolase-type TIM barrel family protein chr5:25697623-25698945 REVERSE LENGTH=333	70%
RefSeq	Arabidopsis thaliana	NP_568988.2	Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002323755.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWS0

Fln msg:

Fln protein: MGWTSGFLGFEHGIVQAPLGPDISGPELVAAVANAGAIGLLRAPDWDSPDLIRKLIRETRILTEKPFGVGVVLSFPHKENIKAILEERVAVIQVNYGDYPRELVDEAHKYGVKVIHQVGSFGEAEKAVAAGMDAIIVQGFEAGGHVIGKESLMALLPRIADLVRGHDIPVIAAGGIVDARGYVAALALGAQGVCLGTRFVATKESSAHPFYKHKLVEASNTEYTDIFGRARWPVAHRVLVTNFFNSWKCLPANVNEAQQPTIGHTKIYEKEQEVKRFSGTAPNATTVGELENMVMYAGEGVGLITEILPAAEVVRSLVEGAQHIIECKFN*

Protein Length: 332

Fln nts: GTGCGGGGGAATCTTGGCGAGCGATGCCGGTGTGATGGACTGTTACATAGGGAGAGTCCTGGCCTGATTGGTAACATTTAACATATGACGCCATGCAGGACGTAAGCCGGAAGTTCCCAACATTATAAAATGTGCAGGGATAGGCTTGGAGAGCGACTGGATGGAAATTTGCTTGTTGATTCAGTGAGAAAGAAAG_-_ATGGGTTGGACATCAGGCTTCCTGGGTTTCGAACACGGTATCGTGCAAGCACCATTGGGGCCCGATATCTCTGGACCTGAACTTGTCGCTGCAGTCGCCAATGCTGGCGCAATCGGCCTTCTTCGAGCCCCAGATTGGGACTCCCCGGATTTAATAAGGAAGTTGATAAGAGAAACAAGAATCTTGACAGAAAAGCCATTTGGTGTAGGCGTTGTTTTATCCTTTCCACACAAGGAGAATATAAAGGCTATATTAGAAGAGCGAGTTGCAGTAATACAGGTTAACTATGGTGATTATCCAAGGGAACTTGTGGATGAAGCCCACAAGTATGGAGTGAAAGTTATCCACCAGGTGGGTTCATTTGGAGAGGCAGAGAAAGCAGTTGCAGCAGGCATGGATGCAATCATTGTTCAAGGTTTTGAAGCAGGTGGTCATGTCATTGGCAAGGAGAGTTTGATGGCTTTGTTACCAAGAATAGCTGATTTGGTTCGAGGTCATGATATTCCTGTTATTGCTGCTGGAGGAATTGTTGATGCCCGTGGATATGTTGCAGCTCTAGCTTTGGGAGCACAAGGTGTTTGCCTTGGAACTAGATTTGTGGCCACAAAGGAAAGCAGTGCTCATCCATTCTACAAACATAAATTGGTTGAGGCATCTAACACTGAATACACTGACATATTTGGTCGTGCAAGATGGCCTGTAGCACACCGTGTCCTTGTAACAAACTTTTTCAACAGTTGGAAGTGTCTTCCTGCTAATGTGAATGAGGCTCAACAACCAACTATCGGTCACACAAAGATATATGAAAAGGAGCAAGAAGTTAAACGATTTTCTGGCACAGCTCCAAATGCAACTACTGTGGGTGAGCTTGAAAACATGGTGATGTATGCTGGAGAAGGGGTAGGGCTCATAACGGAGATTCTTCCAGCTGCTGAAGTTGTTAGAAGTTTAGTTGAGGGTGCACAACATATAATAGAATGCAAGTTCAACTGA___ATATTCAACTTACTATAGCTACTAAACTGTTAACTGTTAGAAGGAAATAAAAGCAGTAAGGACCCTTTCACATGAGAATTGAAATAAAATAGACCCTGGTTGTGCAATTTTTTCTAAAATTAAGACGTTATTCTCCGATGTTCGATCTGAAATGACAGGTGAGGCAATGTAGTTTTGAGGATCATAAATATTTATAATGTCTCTATGCCTGCCTAGAATCATACGTAACAGTAGGAAACAGCAATAGCATCTATGCCTTTGCTAGTAACTAGACAGAACGTGGTTGTCATTGTGCTGCTTCTGTTTCCTGCCTACTATGTCTTGTTTTCTGGCAGATGGCAGATTCAGTTTATAGACGTTGAATAGCAAATCTACATGTTACAACTCCCTACTTCATAGTATGAAACTCATTACGTAGTACAATGATCAAAGTAGCTATTTATCAGTTAT

Fln Alignment:

Contig25143___TSGFLGFEHGIVQAPLGPDISGPELVAAVANAGAIGLLRAPDWDSPDLIRKLIRETRILTEKPFGVGVVLSFPHKENIKAILEERVAVIQVNYGDYPRELVDEAHKYGVKVIHQVGSFGEAEKAVAAGMDAIIVQGFEAGGHVIGKESLMALLPRIADLVRGHDIPVIAAGGIVDARGYVAALALGAQGVCLGTRFVATKESSAHPFYKHKLVEASNTEYTDIFGRARWP-VAHRVLVTNFFNSWKCLPANVNEAQQPTIGHTKIYEKEQEVKRFSGTAPNATTVGELENMVMYAGEGVGLITEILPAAEVVRSLVEGAQHIIECKFN
A9NWS0_______________SSGLLGFEHGIVQGPLGPDISGPELVAAVANAGAIGLLRAPDSDSPDVVRKLIRQTRILTEKPFGIGVILHFPHKENIRVILEERVAIMQVYYGDYPRELVDEAHKSGVKVIHQVGSLEDAEKAAAAGVDAIIVQGVEAGGHVIGKESLMTLLPKVADLIRGHDIPIIAAGGIVDARGYVAALALGAQGVCLGTRFVATKESNAHPFYKQKLVEASNTEYTDIFGRARWPGAAQRVLVTNFFNIWKHLPTDVNEDQQPTIGHTKIYEKDQEVKRFSGIVPNATTVGDLESMVMYAGQGVGLIKEIPPAAEVVRSLVEGAQHIIECKFN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
259		60	40		1.0
1049	87		12		0.992554
1089	14		85		0.993533
1099		14		85	0.993533
1579		76		23	1.0
1602		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain