SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25103

Length: 2135 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene25103
CTTATGCCTAGTCTGCGAGTCTGCTATACAGTTTCGAAAGTCCAGTGACTGAGGGACGCACCCTTCTTTGCTCTGTTAGTAACTCCTCAATTTGGAAGATTGTACCCCATTTGGCCTACGTTGTAATCATGCCTTTCGGCGTTTCTCTCCAGAACTTGACAATTCCTTTGATTTTCCTCTGTTCTGGCGTTTTGCTGGCTTTTTTCACCAGGCATACAAAGGATTTAAATAGTGGGTGCAGTTTGTTGCCACATAAGCACTTTTGGCTATACAGCAATCATGTGGTTACTCCAGGAGGAGTAATTGCTGCAGCAGTGGAAATAAATGCAGAGCGCATTGTGTCTGTGGTCAACCGAGAGAAGGCACCAAAACAGACAAAGGGAGTACATGTGATTGACTATGGAAATGCCGTTATCATGCCCGGTCTTGTTGATGTGCACGTGCATCTAAATGAGCCTGGAAGAGTTGAATGGGAAGGGTTTGAGACAGGAACTAAGGCAGCTGCTGCAGGGGGAGTCACAACACTTATTGATATGCCCCTCAACAGTGTCCCGACAACTACAAGCAAAGAAGCTTTTGAGATGAAGGTTGATGCTGCTAAGGGGAAGCTTTTTGTTGATGTTGGGTTTTGGGGAGGTTTAGTACCGGAGAATGCTTTCAACATTACTGCTCTAAATCAACTTCTAGGGGCAGGTGTACTTGGATTGAAGTCGTTTATGTGCCCTTCAGGTATCAATGACTTCCCAATGACTAATGCAAGCCACATCAAGGCAGCTTTAGAGATATTAGCAAATTATCGTCGTCCTTTACTCGTCCATGCTGAAATTCCTCAGTCTTCACAGGATGAGAGATTGGAGGCAGATGTAGATGGTATTAAAAGGCGGATGTATTCAACATATCTTGAAACTAGGCCACCTTCATGGGAGGAGGCAGCTGTAAAGGAACTAGTGACAGTGGCAAAAGATACAATTCCTAATGGCCCTGCTGATGGAGCTCACATTCATATTGTGCATTTGTCGGATGCAAGTGCTTCACTTGACTTGATTAAAGAAGCAAAAGAAAGTGGTGCAAGGATTACTGTGGAAACCTGCCCACATTATCTTGCATTTGCTGCAGAGGAAATTAGTGATGGGGACACTCGGTTCAAATGTGCACCTCCTATAAGAGATGCGGTTAACAGAGATCATTTGTGGAAGGCTTTAAAAGAAGGGCACATAGATATGCTTAGTTCTGATCACTCACCTTCAAGCCCAGAACTCAAAAACCTTGAAACAGGTGATTTTTTGAGTGCATGGGGGGGCATATCTTCCTTGCAGTTTGGTCTTCCTGTTACCTGGTCATATGGGCAACACTATGGCCTCGAATTGCGTGAGCTATCAGAATGGTGGAGTTCTCGACCTGCCAAGCTTTCTGGTCTACAAAAGAAGGGGGCAGTTTTGACTGGTAAAGATGCTGATCTTGTTGTGTGGGATCCAGAAGTTGATTTTGAAATTGGCAAAAACAATACCATATACCACAAACACCCGATTACACCATATGCAGGGCGGCAATTATCTGGAACTGTGATTGCAACATTTGTGCGAGGGAACTTGGTTTATGAGGATGATCAACATGCTACAGCTGCTTGTGGTGCTCCTATTCTCGCTGTTTAGAGACAACGTTTCTCCTAGTAAGAGGAACATGGGATTTCTAGTTGGACCATGGCAGTGAGAGGAAACAAATATCAATTGCCATTTGGTAGGAACATTTAATTTATTGTAGTAAAGTTGTCATTGAGGAATAATGTAAGCGAGTGGACAACCTTAAGGACATTCAATAGATTCTTATAGATATTGCATGTTAATATATACCAGCTATAAAAGGTGCATCCTATGCATAATAGGTCCAAATAACACTCTAACAATACACTGGCTTCAAGAAGAATTGCCATTGATAGCTAGCTAGAACTGCAGCTCGTGATCTTATTATGACTATCACTACAATGAAATATTTATGATAAGCACAAATTTTAATCAGTGCTCTCTCTAGTGTATAATATTATGTGTACAAAAACATGAGTGCATATTTATATGTGCAAATTCTTATTATGACTATCACTACAATGAAATATTTATGATAAGCACAAATTTTAAGAC

Ace file of the UniGene sp_v3.0_unigene25103 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	allantoinase [Robinia pseudoacacia]	-	-	0.0	57%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	61%
Sma3	Allantoinase	-	-	2.103e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Allantoinase.	EC:3.5.2.5	-	2.103e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		2.103e-08	%
Sma3	Metabolic pathways	01100		2.103e-08	%

Source	Gene names
Sma3	ALN; At4g04955; CHLREDRAFT_190406; DAL1; GSVIVT00013082001; H0901F07.3; MICPUN_97103; MtrDRAFT_AC157507g16v2; Os04g0680400; OsI_17948; OsJ_16648; PHYPADRAFT_113714; PHYPADRAFT_161879; PHYPADRAFT_214778; POPTRDRAFT_831124; RCOM_0936030;

Source	GOs	Term	Type	Identity
Sma3	allantoinase activity	GO:0004038	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	GO:0016810	Molecular Function	-
Sma3	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	GO:0016888	Molecular Function	-
Sma3	allantoin catabolic process	GO:0000256	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dihydroorotase, conserved site	IPR002195	-	-
Sma3	Amidohydrolase 1	IPR006680	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Allantoinase	IPR017593	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04955.1	ATALN, ALN allantoinase chr4:2522301-2525259 REVERSE LENGTH=506	60%
RefSeq	Arabidopsis thaliana	NP_567276.1	allantoinase [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002305806.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9H2W5

Fln msg:

Fln protein: MPFGVSLQNLTIPLIFLCSGVLLAFFTRHTKDLNSGCSLLPHKHFWLYSNHVVTPGGVIAAAVEINAERIVSVVNREKAPKQTKGVHVIDYGNAVIMPGLVDVHVHLNEPGRVEWEGFETGTKAAAAGGVTTLIDMPLNSVPTTTSKEAFEMKVDAAKGKLFVDVGFWGGLVPENAFNITALNQLLGAGVLGLKSFMCPSGINDFPMTNASHIKAALEILANYRRPLLVHAEIPQSSQDERLEADVDGIKRRMYSTYLETRPPSWEEAAVKELVTVAKDTIPNGPADGAHIHIVHLSDASASLDLIKEAKESGARITVETCPHYLAFAAEEISDGDTRFKCAPPIRDAVNRDHLWKALKEGHIDMLSSDHSPSSPELKNLETGDFLSAWGGISSLQFGLPVTWSYGQHYGLELRELSEWWSSRPAKLSGLQKKGAVLTGKDADLVVWDPEVDFEIGKNNTIYHKHPITPYAGRQLSGTVIATFVRGNLVYEDDQHATAACGAPILAV*

Protein Length: 509

Fln nts: CTTATGCCTAGTCTGCGAGTCTGCTATACAGTTTCGAAAGTCCAGTGACTGAGGGACGCACCCTTCTTTGCTCTGTTAGTAACTCCTCAATTTGGAAGATTGTACCCCATTTGGCCTACGTTGTAATC_-_ATGCCTTTCGGCGTTTCTCTCCAGAACTTGACAATTCCTTTGATTTTCCTCTGTTCTGGCGTTTTGCTGGCTTTTTTCACCAGGCATACAAAGGATTTAAATAGTGGGTGCAGTTTGTTGCCACATAAGCACTTTTGGCTATACAGCAATCATGTGGTTACTCCAGGAGGAGTAATTGCTGCAGCAGTGGAAATAAATGCAGAGCGCATTGTGTCTGTGGTCAACCGAGAGAAGGCACCAAAACAGACAAAGGGAGTACATGTGATTGACTATGGAAATGCCGTTATCATGCCCGGTCTTGTTGATGTGCACGTGCATCTAAATGAGCCTGGAAGAGTTGAATGGGAAGGGTTTGAGACAGGAACTAAGGCAGCTGCTGCAGGGGGAGTCACAACACTTATTGATATGCCCCTCAACAGTGTCCCGACAACTACAAGCAAAGAAGCTTTTGAGATGAAGGTTGATGCTGCTAAGGGGAAGCTTTTTGTTGATGTTGGGTTTTGGGGAGGTTTAGTACCGGAGAATGCTTTCAACATTACTGCTCTAAATCAACTTCTAGGGGCAGGTGTACTTGGATTGAAGTCGTTTATGTGCCCTTCAGGTATCAATGACTTCCCAATGACTAATGCAAGCCACATCAAGGCAGCTTTAGAGATATTAGCAAATTATCGTCGTCCTTTACTCGTCCATGCTGAAATTCCTCAGTCTTCACAGGATGAGAGATTGGAGGCAGATGTAGATGGTATTAAAAGGCGGATGTATTCAACATATCTTGAAACTAGGCCACCTTCATGGGAGGAGGCAGCTGTAAAGGAACTAGTGACAGTGGCAAAAGATACAATTCCTAATGGCCCTGCTGATGGAGCTCACATTCATATTGTGCATTTGTCGGATGCAAGTGCTTCACTTGACTTGATTAAAGAAGCAAAAGAAAGTGGTGCAAGGATTACTGTGGAAACCTGCCCACATTATCTTGCATTTGCTGCAGAGGAAATTAGTGATGGGGACACTCGGTTCAAATGTGCACCTCCTATAAGAGATGCGGTTAACAGAGATCATTTGTGGAAGGCTTTAAAAGAAGGGCACATAGATATGCTTAGTTCTGATCACTCACCTTCAAGCCCAGAACTCAAAAACCTTGAAACAGGTGATTTTTTGAGTGCATGGGGGGGCATATCTTCCTTGCAGTTTGGTCTTCCTGTTACCTGGTCATATGGGCAACACTATGGCCTCGAATTGCGTGAGCTATCAGAATGGTGGAGTTCTCGACCTGCCAAGCTTTCTGGTCTACAAAAGAAGGGGGCAGTTTTGACTGGTAAAGATGCTGATCTTGTTGTGTGGGATCCAGAAGTTGATTTTGAAATTGGCAAAAACAATACCATATACCACAAACACCCGATTACACCATATGCAGGGCGGCAATTATCTGGAACTGTGATTGCAACATTTGTGCGAGGGAACTTGGTTTATGAGGATGATCAACATGCTACAGCTGCTTGTGGTGCTCCTATTCTCGCTGTTTAG___AGACAACGTTTCTCCTAGTAAGAGGAACATGGGATTTCTAGTTGGACCATGGCAGTGAGAGGAAACAAATATCAATTGCCATTTGGTAGGAACATTTAATTTATTGTAGTAAAGTTGTCATTGAGGAATAATGTAAGCGAGTGGACAACCTTAAGGACATTCAATAGATTCTTATAGATATTGCATGTTAATATATACCAGCTATAAAAGGTGCATCCTATGCATAATAGGTCCAAATAACACTCTAACAATACACTGGCTTCAAGAAGAATTGCCATTGATAGCTAGCTAGAACTGCAGCTCGTGATCTTATTATGACTATCACTACAATGAAATATTTATGATAAGCACAAATTTTAATCAGTGCTCTCTCTAGTGTATAATATTATGTGTACAAAAACATGAGTGCATATTTATATGTGCAAATTCTTATTATGACTATCACTACAATGAAATATTTATGATAAGCACAAATTTTAAGAC

Fln Alignment:

Contig25103___LQNLTIPLIFLCSGVLLAFFTRHTKDL--NSGCSLLPHKHFWLYSNHVVTPGGVIAAAVEINAERIVSVVNREKAPKQTKGVHVIDYGNAVIMPGLVDVHVHLNEPGRVEWEXXXXXXXXXXXXXXXTLIDMPLNSVPTTTSKEAFEMKVDAAKGKLFVDVGFWGGLVPENAFNITALNQLLGAGVLGLKSFMCPSGINDFPMTNASHIKAALEILANYRRPLLVHAEIPQSSQDERLEADVDGIKRRMYSTYLETRPPSWEEAAVKELVTVAKDTIPNGPADGAHIHIVHLSDASASLDLIKEAKESGARITVETCPHYLAFAAEEISDGDTRFKCAPPIRDAVNRDHLWKALKEGHIDMLSSDHSPSSPELKNLETGDFLSAWGGISSLQFGLPVTWSYGQHYGLELRELSEWWSSRPAKLSGLQKKGAVLTGKDADLVVWDPEVDFEIGKNNTIYHKHP-ITPYAGRQLSGTVIATFVRGNLVYEDDQHATAACGAPILA
B9H2W5_______________LQLRVLPLLALLASLIYFFYFQDSPTLFERSDCSLFPYNHYWIISKLIVTPHGVISGAVEVKEEKIVSIIKEEDWHGNLKKGQIIDYGEAVVMPGLIDVHAHLNDPGRTEWEGFPSGTRAAAAGGITTLIDMPLNNFPATVSAETLKLKIDAAEKNIYVDVGFWGGLVPENAFDANSLEALLSAGALGLKSFMCPSGINDFPMTNSSHIKEGLSILAKYRRPLLVHAEIPQDSESHLEDGENDP---RSYSTYLKTRPPSWEEAAIRELLTVSKDTRIGGPAEGAHLHVVHLSDAGSSLQLLKEAKSNGDSVTVETCPHYLAFSAEEIKDGDTCFKCAPPIRDAANKERLWTALLEGDIDMLSSDHSPSVPDLKLFDEGNFLKAWGGISSLQFVLPVTWSHGRQYGVTLEQLALWWSERPAKLAGQDLKGAIAVGNHADITVWEPNVEFELNNDLPVYLKHPSISAYMGSKLSGKVMSTFVRGNLVYKEGKHAPAACGAPILA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
432		85	14		0.993533
478	12		87		0.992554
546	87	12			0.992554
547	87	12			0.992554
548		12	87		0.992554
549	12			87	0.992554
766		62		37	1.0
839	25	75			0.996473
1110		75		25	0.996473
1164	20			80	0.995493
1166			80	20	0.995493
1168	80			20	0.995493
1324			33	66	1.0
1327	11		88		0.923564
1339	66			33	1.0
1346		11		88	0.923564
1347		11		88	0.923564
1348		11		88	0.923564
1349	11		88		0.923564
1350		88		11	0.923564
1660		87		12	0.992554
1707		87		12	0.992554
1776	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain