SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25022

Length: 2508 nt

UniGene Fasta

>sp_v3.0_unigene25022
ATGTGCCCTCCAACTGCAAACCAATGCAGTGCCCTAAAAACGGCTTTGATGTATTTGTGTAGCCCCTCAACAACGCTGAGGACAATTTCTTACATCCCTGGATAGAGATTACCGATTGCGTAGATATAGAATTAAAATTAGAAATTCGGATAGGGTCGCTAGTAGATTGACGCCAATCGGTAATCTCTATCCAGGGATGTAAGAAATTTTCCTCAGCGTTGTTGAGGGGCTACACAAATACATCAAAGCCGTTTTTGGGCACTGCATTGGTTTGCAGTTGGAGGGCACATTTGGGTAAAAAACTCCAAACTCAAAAGATCATGGCCTCTGTCGATCGGCGATACTCTCTTCCGGAGGATGCACTATTTCTTGGCTTTGACAGCTCTACACAGTCTCTCAAAGCGACTGTTTTGGACTATAATCTGCGTATTGTCCTCTCTGAAACAGTTCATTTTGATTCAGAGTTGCCACATTTCAAGACAAAGGATGGAGTATACAGAGATCCATCGGGCAATGGGCGTGTTGTGTCATCACCTTTGATGTGGGTAGAAGCTCTTGACCTCATACTGAACAAATTGAAGAAGGCAAATTTAAAGTTTGATAAAATCAGGGCTATTTCTGGAAGTGGGCAGCAGCACGGGAGTGTTTATTGGAGAAAGGGTGCCCTGGAATCGATTCTAAAAGGAGTGAATCCAAAAGATCCTTTGGCTGTCCAGCTTCAGGATGCTTTCTCCACGAATGAATCACCTATTTGGATGGACAGTAGTACAACATCACAGTGCAGAGAAATTGAGAAGGCTGTTGGTGGAGCACTTGAATTGGCTTTGCTTACTGGTTCTTGTGCACATGAAAGATACACAGGACCTCAGATACGGAAATTATATCAGACACAAAAGGATGTCTATGATAACACTGAAAGAATTTCTCTTGTAAGTTCTTTCATGGCATCCCTTTTTATTGGTGGCTATGCCAATATTGATGAAACTGATGGAGCAGGGATGAATTTGATGGATCTAAGGGAAAGAACTTGGTCGAAGGAAGCCATAGAGGCCACTGCTCCAAACTTGGAAGAGAAACTTGGACCATTGGCTCCATCATATGCTATTGCTGGTAATTTGAGCTCATATTTTGTAGACAGGTTCATGTTTGACAAAAAATGTTTGGTTATCCAGTGGTCTGGAGACAATCCAAATAGCTTGGCAGGTTTGGCTTTGAATCGTCCTGGAGACCTTGCAATCAGTTTGGGTACAAGTGATGTGGTTTTTGGAATTACAACTGAACCACACCCTGGCCTAGAAGGACATGTTTTACCCAATCCTGTTGATCCAAATTGCTATATGGTGATGCTGGTTTACAAAAATGGGTCACTAACACGAGAAGAGATTCGAAACCGCTGTGCAAATGGATCATGGGACACGTTCAACAAATTTTTAGATCAAACTCCTCCTCTAAATGGTGGGAAATTAGGATTCTACTTTAAAGAACCCGAGATTCTCCCTCCTCTCCCAGTTGGAATCCATCGCTATCAGCTGAGTAACGATGAGGATCAAGCAAAGGGTGGTGTAACAGTTCAGAATGTACCAGAGTTTGATGCACCTTCTGAGGTACGGGCAATTATTGAAGGCCAGTTCCTGTCAATGCGTGCACATGCAGAGAGGATAGGAATGCCAACACCACCAGAACGACTGATAGCAACTGGCGGAGCATCTGCAAATAGCCAGCTCCTTTCTGTCATTGCTTCAATTTTTGGTTGTGCTGTCTATACTGTTCAAAGGCCAGATTCTGCTTCACTAGGTGCTGCATTGAGGGCAGCTCATGGATGGGTATGCCAAAAGGAAGGTAAATTTGTACCTATTTCACGACTATATGAAGAAAAATCAGAAGATACATCATTGGCATGTAAACTTGCTGCCCCTGCTGGTGACACGGATTTATACTTCAAGTATGGCTCTATTATGTCTGAGAGGATGAAAATTGAGCAGGAGTTGGTGGAGCAGGTTGTTACTAAATAGATGCATCTCCTCATCCACCAGGTCAATGGTCAGTGAAAGAAAAGATGGTTGCATGCATGCCATGGGCTTAATATTTTTTCATATGATAGTCATAGAGCCTGCCATTGGTGGCTTAAATCATACCATTTTCACAGAAATAGTCACTACCCATAGTCCTGTTTGAGGGTGACAATTTTGCTTACCATCAACACAGACTGATGGCAGCTGCAGAAACTATTTTTCATATATGAATGTTGATGGGTTACTTATATCGAATGGATGAAACTGGTTGTGGGTGATTTGGTAAATGTCCTCATCTATCCTTATGTATTCTAGTAGAATATTCATTTTATAACATTTTCCTTGCTCTATGTTAATAGACCTTTGCATGCTTGACTACTGTAATTTCGAATTGCCCATTGTTGATGAGAAAGTAATCCCCAAAGGGAATATTGAATTGTATTTTGATGATTCGTTTATGTATACTTTTGTTTCTTTGAATGTATTGAACTCAGAT

Ace file of the UniGene sp_v3.0_unigene25022

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xylulose kinase-2 [Arabidopsis thaliana] gb\|AAK92778.1\| putative xylulose kinase [Arabidopsis thaliana] gb\|AAN13165.1\| putative xylulose kinase [Arabidopsis thaliana] gb\|AED95841.1\| xylulose kinase-2 [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	70%
Sma3	Xylulose kinase	-	-	4.849e-09	-

Source	Gene names
Sma3	At5g49650; GSVIVT00015031001; OJ1340_C08.135; Os07g0640200; Os12g0633000; OsI_27048; OsI_35533; OsJ_25306; OsJ_36979; P0524G08.102; PHYPADRAFT_142327; PHYPADRAFT_227917; POPTRDRAFT_665706; RCOM_1584630; VITISV_026788;

Source	GOs	Term	Type	Identity
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49650.1	XK-2, XK2 xylulose kinase-2 chr5:20152898-20155574 FORWARD LENGTH=558	70%
RefSeq	Arabidopsis thaliana	NP_199776.1	xylulose kinase-2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002325959.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1JV02

Fln msg:

Fln protein: MASVDRRYSLPEDALFLGFDSSTQSLKATVLDYNLRIVLSETVHFDSELPHFKTKDGVYRDPSGNGRVVSSPLMWVEALDLILNKLKKANLKFDKIRAISGSGQQHGSVYWRKGALESILKGVNPKDPLAVQLQDAFSTNESPIWMDSSTTSQCREIEKAVGGALELALLTGSCAHERYTGPQIRKLYQTQKDVYDNTERISLVSSFMASLFIGGYANIDETDGAGMNLMDLRERTWSKEAIEATAPNLEEKLGPLAPSYAIAGNLSSYFVDRFMFDKKCLVIQWSGDNPNSLAGLALNRPGDLAISLGTSDVVFGITTEPHPGLEGHVLPNPVDPNCYMVMLVYKNGSLTREEIRNRCANGSWDTFNKFLDQTPPLNGGKLGFYFKEPEILPPLPVGIHRYQLSNDEDQAKGGVTVQNVPEFDAPSEVRAIIEGQFLSMRAHAERIGMPTPPERLIATGGASANSQLLSVIASIFGCAVYTVQRPDSASLGAALRAAHGWVCQKEGKFVPISRLYEEKSEDTSLACKLAAPAGDTDLYFKYGSIMSERMKIEQELVEQVVTK*

Protein Length: 565

Fln nts: ATGTGCCCTCCAACTGCAAACCAATGCAGTGCCCTAAAAACGGCTTTGATGTATTTGTGTAGCCCCTCAACAACGCTGAGGACAATTTCTTACATCCCTGGATAGAGATTACCGATTGCGTAGATATAGAATTAAAATTAGAAATTCGGATAGGGTCGCTAGTAGATTGACGCCAATCGGTAATCTCTATCCAGGGATGTAAGAAATTTTCCTCAGCGTTGTTGAGGGGCTACACAAATACATCAAAGCCGTTTTTGGGCACTGCATTGGTTTGCAGTTGGAGGGCACATTTGGGTAAAAAACTCCAAACTCAAAAGATC_-_ATGGCCTCTGTCGATCGGCGATACTCTCTTCCGGAGGATGCACTATTTCTTGGCTTTGACAGCTCTACACAGTCTCTCAAAGCGACTGTTTTGGACTATAATCTGCGTATTGTCCTCTCTGAAACAGTTCATTTTGATTCAGAGTTGCCACATTTCAAGACAAAGGATGGAGTATACAGAGATCCATCGGGCAATGGGCGTGTTGTGTCATCACCTTTGATGTGGGTAGAAGCTCTTGACCTCATACTGAACAAATTGAAGAAGGCAAATTTAAAGTTTGATAAAATCAGGGCTATTTCTGGAAGTGGGCAGCAGCACGGGAGTGTTTATTGGAGAAAGGGTGCCCTGGAATCGATTCTAAAAGGAGTGAATCCAAAAGATCCTTTGGCTGTCCAGCTTCAGGATGCTTTCTCCACGAATGAATCACCTATTTGGATGGACAGTAGTACAACATCACAGTGCAGAGAAATTGAGAAGGCTGTTGGTGGAGCACTTGAATTGGCTTTGCTTACTGGTTCTTGTGCACATGAAAGATACACAGGACCTCAGATACGGAAATTATATCAGACACAAAAGGATGTCTATGATAACACTGAAAGAATTTCTCTTGTAAGTTCTTTCATGGCATCCCTTTTTATTGGTGGCTATGCCAATATTGATGAAACTGATGGAGCAGGGATGAATTTGATGGATCTAAGGGAAAGAACTTGGTCGAAGGAAGCCATAGAGGCCACTGCTCCAAACTTGGAAGAGAAACTTGGACCATTGGCTCCATCATATGCTATTGCTGGTAATTTGAGCTCATATTTTGTAGACAGGTTCATGTTTGACAAAAAATGTTTGGTTATCCAGTGGTCTGGAGACAATCCAAATAGCTTGGCAGGTTTGGCTTTGAATCGTCCTGGAGACCTTGCAATCAGTTTGGGTACAAGTGATGTGGTTTTTGGAATTACAACTGAACCACACCCTGGCCTAGAAGGACATGTTTTACCCAATCCTGTTGATCCAAATTGCTATATGGTGATGCTGGTTTACAAAAATGGGTCACTAACACGAGAAGAGATTCGAAACCGCTGTGCAAATGGATCATGGGACACGTTCAACAAATTTTTAGATCAAACTCCTCCTCTAAATGGTGGGAAATTAGGATTCTACTTTAAAGAACCCGAGATTCTCCCTCCTCTCCCAGTTGGAATCCATCGCTATCAGCTGAGTAACGATGAGGATCAAGCAAAGGGTGGTGTAACAGTTCAGAATGTACCAGAGTTTGATGCACCTTCTGAGGTACGGGCAATTATTGAAGGCCAGTTCCTGTCAATGCGTGCACATGCAGAGAGGATAGGAATGCCAACACCACCAGAACGACTGATAGCAACTGGCGGAGCATCTGCAAATAGCCAGCTCCTTTCTGTCATTGCTTCAATTTTTGGTTGTGCTGTCTATACTGTTCAAAGGCCAGATTCTGCTTCACTAGGTGCTGCATTGAGGGCAGCTCATGGATGGGTATGCCAAAAGGAAGGTAAATTTGTACCTATTTCACGACTATATGAAGAAAAATCAGAAGATACATCATTGGCATGTAAACTTGCTGCCCCTGCTGGTGACACGGATTTATACTTCAAGTATGGCTCTATTATGTCTGAGAGGATGAAAATTGAGCAGGAGTTGGTGGAGCAGGTTGTTACTAAATAG___ATGCATCTCCTCATCCACCAGGTCAATGGTCAGTGAAAGAAAAGATGGTTGCATGCATGCCATGGGCTTAATATTTTTTCATATGATAGTCATAGAGCCTGCCATTGGTGGCTTAAATCATACCATTTTCACAGAAATAGTCACTACCCATAGTCCTGTTTGAGGGTGACAATTTTGCTTACCATCAACACAGACTGATGGCAGCTGCAGAAACTATTTTTCATATATGAATGTTGATGGGTTACTTATATCGAATGGATGAAACTGGTTGTGGGTGATTTGGTAAATGTCCTCATCTATCCTTATGTATTCTAGTAGAATATTCATTTTATAACATTTTCCTTGCTCTATGTTAATAGACCTTTGCATGCTTGACTACTGTAATTTCGAATTGCCCATTGTTGATGAGAAAGTAATCCCCAAAGGGAATATTGAATTGTATTTTGATGATTCGTTTATGTATACTTTTGTTTCTTTGAATGTATTGAACTCAGAT

Fln Alignment:

Contig25022___SLPEDALFLGFDSSTQSLKATVLDYNLRIVLSETVHFDSELPHFKTKDGVYRDPSGNGRVVSSPLMWVEXXXXXXXXXXXXXXXXXXXRAISGSGQQHGSVYWRKGALESILKGVNPKDPLAVQLQDAFSTNESPIWMDSSTTSQCREIEKAVGGALELALLTGSCAHERYTGPQIRKLYQTQKDVYDNTERISLVSSFMASLFIGGYANIDETDGAGMNLMDLRERTWSKEAIEATAPNLEEKLGPLAPSYAIAGNLSSYFVDRFMFDKKCLVIQWSGDNPNSLAGLALNRPGDLAISLGTSDVVFGITTEPHPGLEGHVLPNPVDPNCYMVMLVYKNGSLTREEIRNRCANGSWDTFNKFLDQTPPLNGGKLGFYFKEPEILPPLPVGIHRYQLSNDEDQAKGGVTVQNVPEFDAPSEVRAIIEGQFLSMRAHAERIGMPTPPERLIATGGASANSQLLSVIASIFGCAVYTVQRPDSASLGAALRAAHGWVCQKEGKFVPISRLYEEKSEDTSLACKLAAPAGDTDLYFKYGSIMSERMKIEQELVEQV
I1JV02_______________SLPQDSYFLGFDSSTQSLKATVLDSNLNIVASELVHFDSDLPHYKTKDGVHRDPSGNGRIVSPTLMWVEALDLILQKLSKSNFDFAKVAAVSGSGQQHGSVYWKSGSSQ-ILSSLDPKKPLLDQLENAFSIKESPIWMDSSTTAECRAIEKAFGGALELARVTGSRAYERFTGPQIKKIFDTQPEIYDGTERISLVSSFMASLCVGAYASIDHSDGGGMNLMDLKEKAWSKVALEATAPGLESKLGELAPAYAVAGNIAPYFVERYNFNKDCLVVQWSGDNPNSVAGLTLNIPGDLAISLGTSDTVFMITKDPNPGLEGHVFPNPVDAEGYMVMLVYKNGSLTREDVRNCYANKSWDVFNKFLQQTQPLNGGKLGFYYKEHEILPPLPVGFHRYIIENFSD-TPDGLKEQEMEEFDPPSEVRALIEGQFLSMRAHAERFGMPSPPKRIIATGGASANHCILSAIASIFGCDVYTVQRPDSASLGAALRAAHGWLCNKKGGFLPISDMYVDKLEKTSLSCKLSVSAGDHELVSKYATLMKKRIEIENRLVQKL

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
123	66	33			0.997452
124	33		66		0.997452
127	66	33			0.997452
130		33	66		0.997452
131	66			33	0.997452
133			33	66	0.997452
134		33		66	0.997452
135	66		33		0.997452
137	66	33			0.997452
138	66	33			0.997452
139		33		66	0.997452
148	75			25	0.996473
152			75	25	0.996473
153	25		75		0.996473
156	75			25	0.996473
161		75		25	0.996473
162	25		75		0.996473
163	25	75			0.996473
165	75			25	0.996473
166		25	75		0.996473
169			75	25	0.996473
172		25		75	0.996473
173			75	25	0.996473
1034	11			88	0.923564
1038			11	88	0.923564
1040	22		77		0.999999
1044	11		88		0.923564
1166		16		83	0.994512
1227	16	83			0.994512
1228		83	16		0.994512
1231			83	16	0.994512
1232	83	16			0.994512
1234	83		16		0.994512
1235		83		16	0.994512
1236		83	16		0.994512
1287	11	88			0.923564
1297	11		88		0.923564
1339	11		88		0.923564
1367		14		85	0.993533
1380		87		12	0.992554
1382	87			12	0.992554
1383	12		87		0.992554
1393	12		87		0.992554
1397	12	75		12	0.975346
1398		87		12	0.992554
1399	12		87		0.992554
1400	12	75		12	0.975346
1404	14		85		0.993533
1429	85		14		0.993533
1436	20			80	0.995493
1437			20	80	0.995493
1444	87	12			0.992554
1445	87		12		0.992554
1559	88		11		0.923564
1572	75		25		1.0
1576		12		87	0.992554
1682	83		16		0.999991
2157	86			13	0.999973
2324		28		71	1.0
2400	12			87	0.992554
2401	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain