SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24998

Length: 1376 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24998

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNP6

Fln msg:

Fln protein: MLSDSFTDVICTQVGSQGAYALSIPHNEVTVGEVHDALPLGEVERTITQKKQPKGRVRWTVSETLTLINAKQVEKNLPSPGGFMKQTKSAIEKWKCTSAQCHSNGLNRTATQCRDRWDHIQPDYKKIRHYERSIVSEHESYWNMTTKERIDKKLPANFTKEIFDAMEKHFGQNRTIHPGDMVIDTSASNYGAFEHNAASENTPLHKDMKFEIPLEGQGDTSIDRDNHFTGKKRKVASMTSGIKSTLVENNKKIISNLKLAEQGHLKRHEKYCSMFEQRMEIDEKYLKDHILSVQRMVYIDEQKVKAQQELITALNNIGQAMFKICETLGKKV*

Protein Length: 334

Fln nts: TGAGGAGGAGCTGAGCAGACTTTTATGTCATCGAGCAGCATCGGCATGCAATTGAGTATTTCCATTTCACTTTAACCCACAGATCTGAATGCCTTCTCTCTCAGTTTCCCACACGAAATCTATGCAAATTCGTGAAGATGGTATCAGGATCATATTGCACATGGTTCTGTCATTGCCCAATTCGTGGCGGCCTTTCACAAGGCAGTAAACATTCAAATGATTTGTCGAGTCTACTTTTGGTGTAATGGAAAAACATTTATATTTTCCAAGCGCAGAAACTCTGTACCTAGGACCTGAAGGATTCCCATTGGAGGATACCTCACACCATTGAAGACATACAGCCCCTAGACGACGAA_-_ATGTTATCTGATTCTTTTACTGATGTCATTTGTACACAAGTTGGCTCTCAAGGTGCATATGCTCTGAGCATTCCCCATAACGAGGTAACTGTAGGAGAGGTGCATGATGCTTTGCCCCTGGGTGAGGTGGAAAGAACAATAACACAAAAGAAACAACCAAAGGGAAGAGTTCGGTGGACTGTTTCAGAAACCCTTACCCTTATCAATGCCAAACAGGTTGAGAAGAATCTGCCATCCCCCGGTGGTTTTATGAAACAGACTAAATCGGCTATTGAGAAATGGAAATGCACTTCTGCTCAATGTCATTCAAATGGCCTCAATCGCACTGCCACTCAGTGTCGAGACAGGTGGGATCATATTCAGCCAGACTACAAAAAGATTAGGCATTATGAACGAAGTATTGTGTCTGAACATGAGAGCTACTGGAACATGACAACAAAAGAGCGCATAGATAAGAAATTACCAGCAAATTTCACAAAGGAAATATTTGATGCAATGGAAAAGCACTTTGGTCAGAATCGAACCATTCATCCTGGAGACATGGTTATTGATACATCAGCATCCAATTATGGAGCGTTTGAACACAATGCTGCTTCAGAAAATACCCCACTGCATAAGGATATGAAGTTTGAGATACCGCTAGAGGGTCAAGGAGATACTTCCATTGATAGAGACAACCATTTTACAGGGAAAAAGCGGAAAGTAGCATCCATGACATCAGGGATCAAATCAACTTTGGTTGAAAACAATAAGAAAATAATTTCTAATCTTAAGCTGGCTGAGCAAGGGCATCTAAAGCGCCATGAGAAGTATTGTAGTATGTTTGAGCAACGGATGGAAATAGATGAAAAGTACTTGAAAGATCATATCCTGAGTGTACAAAGGATGGTATATATTGACGAGCAGAAGGTTAAAGCACAACAGGAATTAATCACAGCTTTGAATAACATTGGTCAAGCAATGTTTAAGATCTGTGAAACCCTTGGCAAAAAAGTTTGA___TGATTTATTTCCCATTTTACC

Fln Alignment:

Contig24998___MLSDSFTDVICTQVGSQGAYALSIPHNEVTVGEVHDALPLGEVERTITQKKQPKGRVRWTVSETLTLINAKQVEKNLPSPGGFMKQTKSAIEKWKCTSAQCHSNGLNRTATQCRDRWDHIQPDYKKIRHYERSIVSEHESYWNMTTKERIDKKLPANFTKEIFDAMEKHFGQNRTIHPGDMVIDTSASNYGAFEHNAASENTPLHKDMKFEIPLEGQGDTSIDRDNHFTGKKRKVASMTSGIKSTLVENNKKIISNLKLAEQGHLKRHEKYCSMFEQRMEIDEKYLKDHILSVQRMVYIDEQKVKAQQELITALNNIGQAMFKICETLGKKV
B8LNP6_______________MLSDSFPDVICTQVGSQGAYALTIPHNEVTVGEVHDALPLSEVERTITQKKQPKGRVRWTVSETLTLINAKQVEKNLPSPGGFMKQTKSAIEKWKCTSAQCHSNGLNRTATQCRDRWDHIQPDYKKIRHYERSIVSEHESYWSMTTKERIDKKLPANFTKEIFDAMEKHFGQNRTIHPGDMVIDTSASNYGAFEQNAASENTPLHKNMKLEMPLENQGDTSIDRDSHFTGKKRKVASMTSGIKSTLVENNKKIISNLKLAEQGHLKRHEKYCSMFEQRMEIDEKYLKDHIVSVQRMIYIEEQKVKAQQELITALNNIGQAMFKICETMGKKV

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
278	66			33	1.0
307	83		16		0.994512
351			88	11	0.923564
413	88			11	0.923564
630			25	75	0.996473
632	75		25		0.996473
856	20		80		0.995493
857		20	80		0.995493
859	80			20	0.995493
860	80			20	0.995493
1000	85		14		0.993533
1051	83		16		0.994512
1086	85			14	0.993533
1087	85		14		0.993533
1088			14	85	0.993533
1089		85	14		0.993533
1106	75		25		1.0
1107	75			25	1.0
1108		25		75	1.0
1109	75		25		1.0
1110	75			25	1.0
1113	75	25			1.0
1114	75	25			1.0
1115	75			25	1.0
1117	25		25		1.0
1118	75		25		1.0
1119	50	37		12	1.0
1124	25			75	1.0
1127	66	33			1.0
1327			25	75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain