SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24984

Length: 1033 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24984

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	microtubule bundling polypeptide TMBP200 [Nicotiana tabacum]	-	-	0.0	72%
FL-Next	sp=Protein MOR1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	84%
Sma3	Microtubule organization protein	-	-	9.88e-10	-

Source	Gene names
Sma3	At2g35630; B1148D12.6-1; GSVIVT00008463001; GSVIVT00009891001; MOR1; MOR2; MtrDRAFT_AC183502g19v2; OSJNBa0085D07.49-1; Os01g0816400; OsI_04204; OsI_04205; OsJ_03864; OsJ_03865; PHYPADRAFT_106216; POPTRDRAFT_550419; POPTRDRAFT_727336; RCOM_0214170;

Source	GOs	Term	Type	Identity
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	preprophase band	GO:0009574	Cellular Component	-
Sma3	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35630.1	MOR1, GEM1 ARM repeat superfamily protein chr2:14966828-14980361 FORWARD LENGTH=1978	76%
RefSeq	Arabidopsis thaliana	NP_565811.2	microtubule organization 1 protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002300496.1	microtubule organization protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5N749

Fln msg: Overlapping hits, possible frame ERROR between 901 and 855, Distance to subject end: 1784 aas, your sequence is shorter than subject: 212 - 1997

Fln protein: MSEDEKLLKEAKKLPWEERLTHKNWKVRNDGNIDLAALCDSITDPKDPRLREIGSFFKKAVSDSNAPVQEKALDALIAYLRAADADIGRYAKEICDAVVAKCLTGRPKTVEKAQTVFLLWVELEAADVFLEAMEKAIKNKVAKAVVPAIDVMxxxxxxxxxxxxxxxxxILKMLPELFDHQDQNVRASAKGLTLELCRWIGKDPVKSILFEK

Protein Length: 213

Fln nts: AAACAAAATTTCGATATCCCTCCCATCTGATCCCGCTGCGGCCTTTTTCGGCCCATTTTTTTAACCATTGTTACTAATTTCCTCTCGCTCTTCTTCTTCCTATTCTTTTTCTTGCAGAGAATACAATACAATCGGCGGAGCCATAATAAACAACAACGACAAAGAATACAGCCAGGGGAAGGGGGCCTAGGGTCTCAGTGAAAGGAAAAAAATATTGCCCCGGATCGCCCTTTCAGGCATTATCCCTAAGCGGTTCCATAGCCTAGCGGTTCCGTAGCAAAAAGCGAGGCGCCATCCGCTACTCCATTTACAGACCCGCCCGTTATATCTTCAGTTCCCCGACCTTTGCAGGCCCGATAACGAAGAAGAGGAGGAGAATAAACCCTAGGAAATAAAA_-_ATGTCTGAGGATGAGAAATTACTCAAGGAGGCCAAGAAGCTGCCGTGGGAGGAGCGCCTCACACACAAGAACTGGAAGGTCCGGAACGATGGAAATATCGATCTCGCAGCACTCTGCGACAGCATTACCGATCCCAAGGATCCACGTCTGAGAGAAATTGGTTCATTTTTCAAGAAGGCAGTATCTGACTCAAATGCACCAGTCCAAGAAAAGGCGCTGGATGCATTGATTGCATATTTACGTGCAGCAGATGCAGATATTGGAAGGTATGCGAAAGAAATTTGTGATGCAGTTGTTGCTAAATGTCTTACTGGTCGACCAAAGACAGTTGAGAAGGCACAAACTGTGTTTTTGCTGTGGGTGGAGCTGGAAGCTGCTGATGTATTTCTGGAAGCAATGGAAAAAGCAATTAAAAATAAAGTTGCCAAGGCAGTTGTGCCAGCTATTGATGTAATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATACTGAAGATGCTACCAGAACTTTTTGATCACCAAGACCAAAATGTGCGTGCATCAGCCAAAGGTCTCACACTAGAGCTCTGTCGATGGATTGGGAAAGATCCTGTGAAATCAATTTTATTCGAAAAAAT

Fln Alignment:

Contig24984___RLTHKNWKVRNDGNIDLAALCDSITDPKDPRLREIGSFFKKAVSDSNAPVQEKALDALIAYLRAADADIGRYAKEICDAVVAKCLTGRPKTVEKAQTVFLLWVELEAADVFLEAMEXXXXXXXXXXXXXXIDVMxxxxxxxxxxxxxxxxILKMLPELFDHQDQNVRASAKGLTLELCRWIGKDPVKSILFEK
Q5N749_______________RLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTVADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWVELEAAEVFLESMEKAVKNKVAKAVVPAIDVMxxxxxxxxxxxxxxxxILKMLPELFDHPDQNVRASSKGLTLELCRWIGKEPVKAILFEK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
97	14	85			0.993533
99			14	85	0.993533
100		85	14		0.993533
101		85	14		0.993533
102			14	85	0.993533
108	14			85	0.993533
173	57	42			1.0
186			83	16	0.994512
208	66		33		0.997452
338		88		11	0.923564
398	87		12		0.992554
412	87		12		0.992554
534	83		16		0.994512
634	75		25		0.996473
635			25	75	0.996473
636			25	75	0.996473
748			33	66	0.997452
800	80	20			0.995493
802	80			20	0.995493
803	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain