SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24963

Length: 385 nt

UniGene Fasta

>sp_v3.0_unigene24963
CCTCATCCCTTAACAGCTATTCATTAGCACTACTGTAATAGCACCTCCATGCGTCCCGGGTTCAAATCCTCTTACAATCACAATCCTTTGTTTTACATAATTATTTAACTTCACCACCAATCTGTCAATTCGACTCCTCATAGCTTCGCAACGACCCAATGGCTAAATCCTCTGCACATCAGAACGACCACAACAGACTCGAAAACCGCTCACTGCAGTCACGGCAATTCACGGGAATTCGAATGAGAAAATGGGGGAAATGGGTATCCGAAATTCGGATGCCCAATTCCAGGGACAGAATTTGGCTGGGCTCCTACGACACCCCGGAAAAAGCTGCCCGTGCTTACGACTTTGCTGTGTATTGCCTGAGAGGATCCAACGCCAA

Ace file of the UniGene sp_v3.0_unigene24963

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive transcription factor ERF017 n=2 Tax=Arabidopsis RepID=ERF17_ARATH	-	-	3.0e-20	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	AP2/ERF domain-containing transcription factor	-	-	5.95706e-41	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g71450; At1g74930; At2g23340; At3g50260; At4g06746; At4g31060; At4g36900; At5g21960; At5g67190; B1172G12.12; B1172G12.14; B1172G12.5; B1172G12.8; C-EF1; C-EF2; C-EF5; C-EF8; C7A10.460; DBP; DREB; DREB1; DREB2; DREB32; DREB33; DREB34;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	4.0e-27	77%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	6.0e-27	77%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	9.0e-26	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPP6

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 75 - 189

Fln protein: MAKSSAHQNDHNRLENRSLQSRQFTGIRMRKWGKWVSEIRMPNSRDRIWLGSYDTPEKAARAYDFAVYCLRGSNA

Protein Length: 76

Fln nts: CCTCATCCCTTAACAGCTATTCATTAGCACTACTGTAATAGCACCTCCATGCGTCCCGGGTTCAAATCCTCTTACAATCACAATCCTTTGTTTTACATAATTATTTAACTTCACCACCAATCTGTCAATTCGACTCCTCATAGCTTCGCAACGACCCA_-_ATGGCTAAATCCTCTGCACATCAGAACGACCACAACAGACTCGAAAACCGCTCACTGCAGTCACGGCAATTCACGGGAATTCGAATGAGAAAATGGGGGAAATGGGTATCCGAAATTCGGATGCCCAATTCCAGGGACAGAATTTGGCTGGGCTCCTACGACACCCCGGAAAAAGCTGCCCGTGCTTACGACTTTGCTGTGTATTGCCTGAGAGGATCCAACGCCAA

Fln Alignment:

Contig24963___MAKSSAHQNDHNRLENRSLQSRQFTGIRMRKWGKWVSEIRMPNSRDRIWLGSYDTPEKAARAYDFAVYCLRGSNA
B8LPP6_______________MAKPSSDQKGHSKPQKCSLKSRQFKGIRMRKWGKWVSEIRMPNSRDKIWLGSYDTPEKAARAYDFAVYCLRGSKA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
121		33		66	0.997452
153	33		66		0.997452
168		33		66	0.997452
193	80		20		0.995493
216	25	75			0.996473
223		25	75		0.996473
226	75		25		0.996473
232	50	50			1.0
279	33		66		0.997452
295			66	33	0.997452
324	33	66			0.997452
342	33			66	0.997452
345		33		66	0.997452
366		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain