SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24931

Length: 1639 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24931

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	0.0	66%
FL-Next	tr=CYP720B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	CYP720B1; CYP720B2; CYP90A7; POPTRDRAFT_659523; RCOM_1607300;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E5FA69

Fln msg: Separated hits, possible frame ERROR between 287 and 293, your sequence is shorter than subject: 408 - 486

Fln protein: MAETSVTYSWLVGFVCFVLAIILLQLYIIVDSRGYNLPPGSRGWPLIGESLGFMRAINSGSQPRRFIEDxxxKLVLNLMAKQLLDLSPSKETEEIGKAFAAFSKAFLAVPIRIPGTSYARGIKVRKSRNALLLCFTDY*FDWFLRDE*WLGSLQGREFLIKKINEGIKHRRQHPDEAVHNDFLGELLKEDLHSEEVIADLVLFLLFAGHETSASAMVSIKFLTDCPRALLELKEEHGALLKRKGSPRNQKLTWDDYQSMKFTECVIYETLRLANVAPALYREAKEDIKIKGGFVIPRGWTVMVLLNSMHLDEKYHSSALTFDPWRWQRQLENNELSKNPSFIPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALEDDKISYFPVSHLTKGFPIRLHHLQERMDD*

Protein Length: 409

Fln nts: AGATTGATTGATAAGCATTCAAATTAGTAAGAGATTAGGGATAGTTGCCTTCTGAGGAAAGCATTGAATTGGGGATC_-_ATGGCGGAGACTAGTGTTACGTATTCATGGCTGGTGGGCTTCGTCTGTTTCGTTCTGGCGATAATTCTGCTTCAGCTCTACATAATAGTGGACAGTCGAGGCTACAATTTACCTCCCGGTTCCAGAGGGTGGCCATTGATTGGAGAATCCTTGGGCTTCATGCGAGCGATTAATTCGGGTTCACAACCACGCCGATTCATTGAAGATCGxxxxxxTAAGCTTGTTCTGAATTTGATGGCAAAACAATTGCTGGACTTATCTCCGTCCAAGGAGACGGAAGAGATCGGTAAGGCATTCGCCGCTTTTTCTAAAGCTTTCCTTGCCGTTCCCATTAGAATCCCGGGTACCTCGTACGCCAGAGGAATTAAGGTGCGCAAGAGCCGCAATGCTTTGCTCCTTTGTTTTACTGATTACTAATTTGATTGGTTCTTACGGGATGAGTAATGGCTAGGATCGCTGCAGGGCAGAGAGTTTCTGATAAAAAAGATTAATGAGGGTATAAAGCACAGAAGGCAGCATCCAGATGAAGCTGTCCACAATGATTTCTTAGGAGAACTCTTGAAAGAAGACTTGCATTCGGAAGAAGTTATAGCAGATTTAGTATTATTCCTGCTCTTCGCTGGTCACGAGACCTCAGCCTCAGCGATGGTTTCTATCAAATTTCTCACGGACTGTCCCAGGGCACTTCTCGAACTGAAGGAGGAGCACGGCGCTCTGTTAAAGAGAAAGGGGAGTCCAAGAAACCAAAAGCTCACTTGGGATGACTACCAGTCAATGAAATTCACCGAATGTGTCATATATGAAACACTTCGTCTCGCCAACGTCGCTCCAGCGCTTTACAGAGAAGCAAAAGAAGACATTAAAATTAAAGGAGGCTTTGTGATTCCAAGAGGGTGGACAGTCATGGTACTTCTGAACAGCATGCATCTGGACGAAAAGTACCATTCTTCTGCGCTCACATTTGACCCATGGCGTTGGCAACGGCAGCTCGAAAATAATGAGCTCTCAAAGAACCCCTCTTTTATACCTTTTGGAGGGGGGGCCAGGCTCTGTCCAGGAATGCATCTCGCAAAACTTGAGCTGGCCCTCTTTCTTCATAACTTCGTCACCAAATTCAGATGGGAGGCACTGGAGGATGATAAGATCTCCTACTTTCCTGTTTCTCACTTGACTAAAGGCTTTCCGATCCGTCTACATCATCTTCAAGAACGAATGGATGATTAA___TCGCATTAGAATAGGATTTGATTCATGCAGTATGGACTATTATAAACAGGCAAATAAGTTTGAAGGAACGGATGATTAATCGCATTATACTAGCATTTGATTCATGCAGTATGGAGTGTTAAAAATAGTAAGCAAGTTTGAAGCATAAAACAATGATAACCACTCTGTGGACATGTAACTATCATGTTTGTTGGTGTGAGTAGATTTCAAAGATATTTATGTATTTCCTGTATTGAAGCCTGACAATTTGGGTTTCACTTTGATTCTCATAGGGTTAAAGTATTAATCAGCTATTATTGTGTATCCTTGTTTAAACGACAAGTAACAAGGTTCCAAGTG

Fln Alignment:

Contig24931___MAETSVTYSWLVGFVCFVLAIILLQLYIIV---DSRGYNLPPGSRGWPLIGESLGFMRAINSGSQPRRFIEDRxxKLVLNLMAKQLLDLSPSKETEEIGXXXXXXXXXXXXVPIRIPGTSYARGIKVRKSRNALLLCFTDY*FDWFLRDE*WLGSLQGREFLIKKINEGIKHRRQHPDEAVHNDFLGELLKEDLHSEEVIADLVLFLLFAGHETSASAM-VSIKFLTDCPRALLELKEEHGALLKRKGSPRNQKLTWDDYQSMKFTECVIYETLRLANVAPALYREAKEDIKIKGGFVIPRGWTVMVLLNSMHLDEKYHSSALTFDPWRWQRQLENNELSKNPSFIPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALEDDKISYFPVSHLTKGFPIRLHHLQERMDD
E5FA69_______________MAET-LAYSWLVGLVCFVLGLLLLQLYKLVWRVDNRGYKLPPGSTGWPVIGETISFFRGINSTAQPRQFIQDRxxQLVLNLMAKQLLDLSPSKETEEICEAFGHFSDALLSVPIRIPGTAYARGFKAR-------------------------------EFLIKKIYEGIEDRRKHP-QAVHNDLLTKLLKEDSLSEEVIADFILFLLFAGHETSSRSMSFAIKFLTGCPRALEELKAEHDALLKRKGKQKNQKLNWDDYQSMKFTQCVINETLRLGNFGPGVFREAKEDIKTKGGFMIPRGWTVYVFLTGTHLDNKYHSSALTFDPWRWQQHLQDQELSKNPSFMPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALQHDKISYFPFPRLIKGLPIRL-HLRERLDD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
51		42		57	1.0
65		42		57	1.0
111		42	57		1.0
134			28	71	1.0
141	54		45		1.0
147			36	9	1.0
161			45	54	1.0
229		12		87	0.992554
249			14	85	0.993533
280		33	66		1.0
290	33			66	1.0
339		80		20	0.995493
365			50	50	1.0
366	50	50			1.0
369	33		66		0.997452
370		66	33		0.997452
372			33	66	0.997452
374		66		33	0.997452
375			66	33	0.997452
974		20		80	0.995493
1072	85		14		0.993533
1073	85		14		0.993533
1074	85		14		0.993533
1122		75	25		0.996473
1210		8	91		0.999766
1222	12		87		1.0
1272		10		90	0.999898
1314	64		35		1.0
1317			41	58	1.0
1327		45		54	1.0
1328	45			54	1.0
1333			54	45	1.0
1340		33	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain