SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24789

Length: 1267 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24789

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectate lyase n=4 Tax=Spiraeoideae RepID=Q6U7H9_MALDO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Pectate lyase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectate lyase.	EC:4.2.2.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		0.0	%

Source	Gene names
Sma3	9612; AT3G01270; AT59; At1g04680; At1g11920; At1g14420; At1g30350; At1g67750; At2g02720; At3g01270; At3g07010; At3g24230; At3g24670; At3g27400; At3g53190; At3g54920; At4g13210; At4g13710; At4g22080; At4g22090; At4g24780; At5g09280; At5g15110; At5g48900; A

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pectate lyase activity	GO:0030570	Molecular Function	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67750.1	Pectate lyase family protein chr1:25401660-25403165 FORWARD LENGTH=408	73%
RefSeq	Arabidopsis thaliana	NP_564906.1	putative pectate lyase 5 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002322215.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS41

Fln msg: your sequence is shorter than subject: 379 - 490

Fln protein: RQSLADCAIGFGRDAIGGKNGQYYVVTDSSDEDAVNPKPGTLRHAVIQDEPLWIIFQSDMVIRLKVELIMNSFKTIDGRGADVHIAHGACITIQYVTNIIIHGVSIHECVQAGNAMVRSSPEHYGWRTVSDGDGISIFGGRYIWIDHCSLSNCKDGLIDAIMGSTAITISNNYFTHHDKVMLLGHADSYTNDAIMQITIAFNYFGEGLIQRMPRCRHGYFHVVNNQYAHWEMYAIGGSAKPTINSEGNKFIAPDNANAKEVTKRLDVVGEEWTQWNWRSAGDLMLNGAYFVPSGAGAEVNYALASSVEAKPAVLVETMTRDAGVLGGSHSSRRDGNAGIKGQLSVSTAPVSIFSAAHSQRIIYFLLCALCFVLTALDV*

Protein Length: 380

Fln nts: CAGGCAGAGCCTTGCAGACTGTGCCATTGGCTTCGGCCGAGATGCCATTGGAGGCAAGAACGGTCAATACTATGTAGTAACAGATTCCAGCGACGAAGATGCAGTGAATCCAAAGCCCGGCACTCTCCGCCATGCCGTTATTCAGGACGAGCCGCTATGGATTATATTTCAGAGCGACATGGTCATTAGGCTCAAAGTAGAACTCATCATGAACAGTTTCAAGACAATCGATGGCAGAGGCGCCGACGTCCACATTGCCCACGGTGCCTGCATTACGATACAGTATGTGACCAACATCATAATTCATGGCGTTAGCATCCACGAGTGCGTTCAAGCAGGCAATGCCATGGTGAGATCTTCCCCTGAGCATTACGGCTGGAGAACAGTGTCTGACGGCGATGGAATTTCAATTTTTGGAGGACGCTATATCTGGATCGATCACTGCTCTCTTTCCAACTGTAAAGATGGCCTTATTGACGCAATCATGGGATCCACTGCCATCACCATTTCAAACAATTATTTCACGCACCATGACAAGGTCATGCTTCTTGGACACGCGGACAGCTACACGAATGATGCAATAATGCAAATAACCATCGCTTTCAATTATTTTGGCGAAGGGCTCATTCAAAGGATGCCCAGGTGTAGACATGGGTACTTTCACGTAGTGAACAACCAGTACGCACATTGGGAAATGTACGCAATAGGTGGGAGCGCTAAGCCAACCATTAACAGCGAAGGCAACAAATTCATAGCGCCTGATAACGCCAACGCTAAAGAGGTAACCAAACGGCTGGATGTCGTGGGCGAGGAATGGACGCAGTGGAACTGGAGATCAGCAGGAGACCTAATGCTTAACGGCGCTTACTTCGTTCCGTCAGGGGCAGGAGCGGAGGTTAACTATGCCTTGGCCTCCAGCGTCGAGGCAAAGCCAGCGGTCCTCGTGGAAACCATGACCAGAGACGCGGGTGTCTTAGGCGGAAGCCATAGTAGCCGCCGCGATGGCAATGCCGGAATAAAGGGGCAATTGTCAGTATCAACTGCGCCAGTATCGATCTTTTCTGCTGCTCATTCTCAAAGAATAATATATTTCCTTCTGTGCGCTCTCTGCTTTGTGTTGACAGCGTTGGACGTCTGA___AGGTAAATTTTGGCACTAATTGGCAGCATAGTTCCGTGCCATAGAGATCCATGAAAGACCTTATGCCATGGAAAAATCCCGTTGATATACCATGAAGCCCAaAAAGGTTCAATATTGCATTTGGGCATA

Fln Alignment:

Contig24789___RQSLADCAIGFGRDAIGGKNGQYYVVTDSSDEDAVNPKPGTLRHAVIQDEPLWIIFQSDMVIRLKVELIMNSFKTIDGRGADVHIAHGACITIQYVTNIIIHGVSIHECVQAGNAMVRSSPEHYGWRTVSDGDGISIFGGRYIWIDHCSLSNCKDGLIDAIMGSTAITISNNYFTHHDKVMLLGHADSYTNDAIMQITIAFNYFGEGLIQRMPRCRHGYFHVVNNQYAHWEMYAIGGSAKPTINSEGNKFIAPDNANAKEVTKRLDVVGEEWTQWNWRSAGDLMLNGAYFVPSGAGAEVNYALASSVEAKPAVLVETMTRDAGVL-GGSHSSRRDGNAGIKGQLSVSTAPVSIFSAAHSQRIIYFLLCALCFVLTA
B8LS41_______________RQRLADCAIGFGRDAIGGKNGRYYVVTDSSDEDAVNPKPGTLRHAVIQDEPLWIIFQSDMVIQLKEELMMNSFKTIDGRGADVHIAHGACITIQFVTNIIIHGVSIHDCFQAGNAMVRNTPEHYGWRTVSDGDGISIFGGRYIWIDHCSLSNCKDGLIDAIMGSTAITISNNYFTHHDKVMLLGHSDSYVGDAIMQVTIAFNYFGEGLMQRMPRCRHGYFHIVNNHYSHWEMYAIGGSANPTINSEGNRFIAPDNANAKQVTKRLNAVDEEWMRWNWRSAGDLMVNGAFFVPSGAGTGNNYALASSVGAKSAFLVKTITEDAGVLQSRTHSSRSNDNT---GRMSVSAAPMSILSAAHSHQIIYFFLCALCYVLTA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
343		33		66	0.997452
782	75	25			0.996473
863		60		40	1.0
940		66		33	1.0
1083	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain