SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24786

Length: 1155 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24786

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione-S-transferase n=4 Tax=Picea RepID=Q2Q9T2_PICMA	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Glutathione S-transferase	-	-	5.166e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	1.682e-37	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		1.682e-37	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		1.682e-37	%
Sma3	Drug metabolism - cytochrome P450	00982		1.682e-37	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	3.935e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		3.935e-13	%

Source	Gene names
Sma3	At1g17170; At1g17180; At1g17180/F20D23_12; At1g17190; At1g53680; At1g78320; At1g78340; At1g78340/F3F9_13; At1g78360; At1g78370; At1g78380; At3g43800; BI-GST/GPX; C-7; EgHypar; F20D23.11; F20D23.12; F20D23.13; F22G10.22; GST; GST1; GST1a; GST1b; GST2; GST5

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	lactoylglutathione lyase activity	GO:0004462	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	glutathione binding	GO:0043295	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to herbicide	GO:0009635	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	cellular response to water deprivation	GO:0042631	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78380.1	ATGSTU19, GST8, GSTU19 glutathione S-transferase TAU 19 chr1:29486659-29487819 REVERSE LENGTH=219	50%
RefSeq	Arabidopsis thaliana	NP_565178.1	glutathione S-transferase TAU 19 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002317606.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSK9

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: ANGPVPSACEFLEEKGVRYEYQEENVLACKSELLLQTNPVHKRVPVLIHEGKPICESVIILQYIDEVWPGSNSFMPSNPYDRALGRFWADFMDTKFLENVVQRILRCTGEAQEEGTRYMLECLGLLEGELSAGGGKPYFAGDQFGFLDIVLIPNAPWFYALETLAKWKIPWDGEFPRLQGWMKRCLERESVKKILQDPLKVSEYAIQLRKAFVTSD*

Protein Length: 218

Fln nts: GGGGGCTATCAAGGAGGGCAATCCTTAGTATCCACTTGTCGAAGATGGGCGAGAGGGAGGAGCAAGTAAAAGTGTTGAGCCAATGGCCCAGTCCCTTCTGCATGCGAGTTTTTGGAAGAGAAAGGGGTGAGATATGAATACCAAGAAGAAAATGTTCTCGCCTGCAAGAGTGAGCTGCTGCTACAGACGAACCCCGTCCACAAGAGAGTACCCGTTCTCATCCATGAGGGCAAGCCCATTTGCGAGTCTGTCATCATTCTCCAATACATCGACGAGGTCTGGCCGGGTTCTAATTCTTTCATGCCCTCCAATCCATATGACCGAGCCCTGGGAAGATTCTGGGCAGACTTTATGGACACTAAGTTTTTGGAAAATGTTGTTCAAAGGATTTTGAGATGCACCGGTGAAGCTCAAGAAGAGGGTACGCGCTACATGTTAGAATGCCTGGGGCTGCTAGAAGGGGAGCTGTCAGCAGGTGGAGGTAAGCCTTATTTTGCAGGGGACCAGTTTGGGTTCCTGGACATCGTATTGATTCCCAATGCCCCTTGGTTCTATGCACTGGAAACCCTCGCCAAATGGAAAATACCATGGGATGGTGAGTTCCCTAGGCTTCAAGGGTGGATGAAGAGATGCTTGGAGAGGGAGAGCGTCAAGAAGATTCTTCAGGATCCTCTTAAGGTCTCGGAATATGCCATTCAACTAAGGAAGGCATTTGTCACCTCCGATTGA___CTGAAAATCTTAAGTTCTTGCAGCATCGTTGATATATATATTGAGAGTATGGAGTGGAATAGAGTAGAGAGACACTTACTAGATTTTGAGATGTTTGAAGTCCCCCTTAAGAGTGATAATGCATCAGACAGTTGTGTTCAATCATTTCAATGATTTTTATATATACAGTTTGTCACAGTTGTGTTGAATGGTTTCAATAATTACAGTTATAATTTGAGCTTCAGCCTTCACGACTTGGCAGGTCATTTAACCAGTGCAACATTAGGACTATCTGTTTATGGATGGGAAGTCTTGCGTTGAAGATAAGCTTGTTGTGAAGAGTGATGTAAATGCTCTCTGTTGTTGTTGACTACTCTGTGTTACTCTATCTTTTGTTCTGTTCCGTGTTTCCTTTTTCAATAAATTGGTATTGGAGCAAGTTTTAGT

Fln Alignment:

Contig24786___LEEKGVRYEYQEENVLACKSELLLQTNPVHKRVPVLIHEGKPICESVIILQYIDEVWPGSNSFMPSNPYDRALGRFWADFMDTKFLENVVQRILRCTGEAQEEGTRYMXXXXXXXXXXXXXXXXKPYFAGDQFGFLDIVLIPNAPWFYALETLAKWKIPWDGEFPRLQGWMKRCLERESVKKILQDPLKVSEYAIQLRKAFVTSD
A9NSK9_______________LEEKGVRYEYQEES-LASKTQLLLQMNPVHKKIPVLIHNGKPICESLIILQYMDEVWPGSNSLLPSNPYDRALARFWADFLDTKFLVNVVDKIFKCTGEGQEEGTRYMLEYLGLLERELSAGEGKPYFGGEQFGFLDIAIIPYACWFHTLETFRKWKIPWETEFPRLQEWVKKSMERESVKKILPDAQKVLQYAIPVRKRFVSSD

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
961		16		83	0.999991
982	30		70		1.0
993	50			50	1.0
997	12	87			0.992554
1000	12	87			0.992554
1002	12			87	0.992554
1003	12			87	0.992554
1008		85		14	0.993533
1012		42		57	1.0
1035		16		83	0.994512
1045	80			20	0.995493
1057	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain