SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24779

Length: 2218 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24779
TGAATCTGCTACAACTCGTGCCCAGATTGAACTTTTTGAAGCATTAATTAATGGATGCAAAGAGGTGGTTAGAGCAGTAAATGGCGAGGGCAAGGGGGCTGTCTTGGACTTCTTTGGAGTGTCTGTTAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCAAGCGATTTAATGACCCTGTTTCACAATTTCGATTGAAAACACACCCCAGAAATCCCTCATGGTCGAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAGGCTTCTTCTTGGCATTCACTACTATGGGTATGGAAATTGGGAAAGGATAAGAACAGACACTAAGCTTTGTCTAACTGGAAAGATAGCTCCGGCCGGCCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGAGCCTCTGCTCTCCTACGGAAGGAATTTGAATCTGAGAAGGACCAATCAATTGCAAGATTTCAATCAACTGATAAGGTAGGCTCTAGACGTGAAAGAGATGATATCAAAACTATAAATGTCGACTTGAAGGAAGGGCATGGACTGTCCTCTAAAACAGTCTCCAATAATCCTAAAAAGTGGACAAAGCCTAACAAGGAACGCCATCAGAAACGTCCTAAGGTTGAACCCAAAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTATCAAAGATACAAGGAAAAGATTGACCAAGAGACAAGAGAAGAACGGTGGAGAGGATGGTGTTCTAATGTTATGGATGATCAGTTACGCACTCTGAAAAGATTACAGAAGTTGCAGACAACCAGCGTAGATCTTCCTAAAGAAGAGGTACTCTACAAAGTGAAAAAATACTTGCAGCTTCTTGGACAGAAAATTGACGATATATTGAAAGAACATGCAAACTCCCGCAGTTATTCTAGGATGGTTACGAGGCTATGGAACTATGTTGCTACATTTTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAAGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCCGCTTCATTTGTTTTTGATCATCCCAATATACGAAGGTATCAGCCTGTGGAAGGACATGTGACAGGCACAATTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGACGTAGGAGAATTGGTGGTTATGAAGATAGGAATGGGCAAGGAAGTATAGATAGGCCTCCAGTTAGCTCGTATTCACCATATGGGGTCCCATCAAATGGTAGCAAATTTCAGGATCCGAGTTCAGCAGGTATCCTGGGGTGTGGTCCTGGAGACCATAGGCGGGTGGTTGGTGAAAGATGGAACAGGCCACACCCGAACTATCCCTTATCTGGACAGGCAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTCCCAAACAGTCATCCTCCTGCTTTTATGCATTAAATTTTATGTGATGACATTATCTAGCTGCATCAATTGCATCTTAATTATCTTCAATATTGATGCGTGCAATAGCACATGACCTTGTGGTAAAGCAGGGGAAGCTGCTGCAAGGTAGTAAGATTCAATCTGGTAAATGGGGGTAGCAGGTCAAAAGAGATGGGCTATTGTTGGTGAAACCTTCTGGCTGACATAATGAATGTAAATATGGGTTGCGGGGGTGTCTCTTCAGAAAAAAATTGTCTTGTTATTGTCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTCCATTGGTTTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGAAAGTTGTTCTTTACATTCTGTGATACTTATGTGGATTTTTTTGTACAATGTTCTGGTCTTTACCTATGACTATCCAAATGTCCACTGGAAGACATGAAGGAATGCTTTTGGTACCGACATTTTTGTAAATTGCATTTCATACTTTTGCAGTTTTGTTGGGAAACTCACAATGACATTACTTAGACCAAGAGCGCAGCATTTGAGAAGAGTAGCATGCAAATCATGAAAAGAGTGCAGTGAAGCCTTCTTAGTAAGAAGGGAACATAACACTGATAATTGCGCTGGCTGAGAAATTGTGGTTCCATCTAACTGTGAAATATTACAATAACACAA

Ace file of the UniGene sp_v3.0_unigene24779 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chromodomain helicase DNA binding protein, putative (EC:2.7.11.1); K11367 chromodomain-helicase-DNA-binding protein 1 [EC:3.6.1.-]	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	45%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	37%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	37%
AutoFact	Lipopolysaccharide biosynthesis	00540	37%
AutoFact	Folate biosynthesis	00790	37%
AutoFact	Metabolic pathways	01100	37%

Source	Gene names
Sma3	At2g13370; CHR1544; CHR907; GSVIVT00022239001; OJ1477_F01.130-1; Os07g0660200; OsI_27196; OsJ_25446; P0496C02.115-1; PHYPADRAFT_132084; PHYPADRAFT_34; POPTRDRAFT_172231; POPTRDRAFT_804496; RCOM_0062740;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HA08

Fln msg: your sequence is shorter than subject: 512 - 1763

Fln protein: ESATTRAQIELFEALINGCKEVVRAVNGEGKGAVLDFFGVSVKAQELAERVRELQLLSKRIKRFNDPVSQFRLKTHPRNPSWSKSCSWNQVDDARLLLGIHYYGYGNWERIRTDTKLCLTGKIAPAGLSASETFLPRAPHLDARASALLRKEFESEKDQSIARFQSTDKVGSRRERDDIKTINVDLKEGHGLSSKTVSNNPKKWTKPNKERHQKRPKVEPKVKEEGEISESEEPQYQRYKEKIDQETREERWRGWCSNVMDDQLRTLKRLQKLQTTSVDLPKEEVLYKVKKYLQLLGQKIDDILKEHANSRSYSRMVTRLWNYVATFSNLSGERLSEIYQKLTQEAHQDTGGASTDINSSAAGPSGRDVDPSQPASFVFDHPNIRRYQPVEGHVTGTIHRDQETGKSEAWKRRRRIGGYEDRNGQGSIDRPPVSSYSPYGVPSNGSKFQDPSSAGILGCGPGDHRRVVGERWNRPHPNYPLSGQADHAIPRQGRQTDNGSFPNSHPPAFMH*

Protein Length: 513

Fln nts: TGAATCTGCTACAACTCGTGCCCAGATTGAACTTTTTGAAGCATTAATTAATGGATGCAAAGAGGTGGTTAGAGCAGTAAATGGCGAGGGCAAGGGGGCTGTCTTGGACTTCTTTGGAGTGTCTGTTAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCAAGCGATTTAATGACCCTGTTTCACAATTTCGATTGAAAACACACCCCAGAAATCCCTCATGGTCGAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAGGCTTCTTCTTGGCATTCACTACTATGGGTATGGAAATTGGGAAAGGATAAGAACAGACACTAAGCTTTGTCTAACTGGAAAGATAGCTCCGGCCGGCCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGAGCCTCTGCTCTCCTACGGAAGGAATTTGAATCTGAGAAGGACCAATCAATTGCAAGATTTCAATCAACTGATAAGGTAGGCTCTAGACGTGAAAGAGATGATATCAAAACTATAAATGTCGACTTGAAGGAAGGGCATGGACTGTCCTCTAAAACAGTCTCCAATAATCCTAAAAAGTGGACAAAGCCTAACAAGGAACGCCATCAGAAACGTCCTAAGGTTGAACCCAAAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTATCAAAGATACAAGGAAAAGATTGACCAAGAGACAAGAGAAGAACGGTGGAGAGGATGGTGTTCTAATGTTATGGATGATCAGTTACGCACTCTGAAAAGATTACAGAAGTTGCAGACAACCAGCGTAGATCTTCCTAAAGAAGAGGTACTCTACAAAGTGAAAAAATACTTGCAGCTTCTTGGACAGAAAATTGACGATATATTGAAAGAACATGCAAACTCCCGCAGTTATTCTAGGATGGTTACGAGGCTATGGAACTATGTTGCTACATTTTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAAGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCCGCTTCATTTGTTTTTGATCATCCCAATATACGAAGGTATCAGCCTGTGGAAGGACATGTGACAGGCACAATTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGACGTAGGAGAATTGGTGGTTATGAAGATAGGAATGGGCAAGGAAGTATAGATAGGCCTCCAGTTAGCTCGTATTCACCATATGGGGTCCCATCAAATGGTAGCAAATTTCAGGATCCGAGTTCAGCAGGTATCCTGGGGTGTGGTCCTGGAGACCATAGGCGGGTGGTTGGTGAAAGATGGAACAGGCCACACCCGAACTATCCCTTATCTGGACAGGCAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTCCCAAACAGTCATCCTCCTGCTTTTATGCATTAA___ATTTTATGTGATGACATTATCTAGCTGCATCAATTGCATCTTAATTATCTTCAATATTGATGCGTGCAATAGCACATGACCTTGTGGTAAAGCAGGGGAAGCTGCTGCAAGGTAGTAAGATTCAATCTGGTAAATGGGGGTAGCAGGTCAAAAGAGATGGGCTATTGTTGGTGAAACCTTCTGGCTGACATAATGAATGTAAATATGGGTTGCGGGGGTGTCTCTTCAGAAAAAAATTGTCTTGTTATTGTCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTCCATTGGTTTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGAAAGTTGTTCTTTACATTCTGTGATACTTATGTGGATTTTTTTGTACAATGTTCTGGTCTTTACCTATGACTATCCAAATGTCCACTGGAAGACATGAAGGAATGCTTTTGGTACCGACATTTTTGTAAATTGCATTTCATACTTTTGCAGTTTTGTTGGGAAACTCACAATGACATTACTTAGACCAAGAGCGCAGCATTTGAGAAGAGTAGCATGCAAATCATGAAAAGAGTGCAGTGAAGCCTTCTTAGTAAGAAGGGAACATAACACTGATAATTGCGCTGGCTGAGAAATTGTGGTTCCATCTAACTGTGAAATATTACAATAACACAA

Fln Alignment:

Contig24779___ESATTRAQIELFEALINGCKEVVRAVNGEGKGAVLDFFGVSVKAQELAERVRELQLLSKRIKRFNDPVSQFRLKTHPRNPSWSKSCSWNQVDDARLLLGIHYYGYGNWERIRTDTKLCLTGKIAPAGLSASETFLPRAPHLDARASALLRKEFESEKDQSIARFQSTDKVGSRRERDDIKTINVD-LKEGHGLSSKTVSNNPKKWTKPNKERHQKRXXXXXXXXXXXXXXXXXEPQYQRYKEKIDQETREERWRGWCSNVMDDXXXXXXXXXXXXXTSVDLPKEEXXXXXXXXXXXXXXKIDDILKEHANSR-SYSRMVTRLWNYVATFSNLSGERLSEIYQKLTQEAHQDTGGASTDINSSAAGPSGRDVDPSQPASF-------VFDHPNIRRYQPVEGHVTGTIHRDQETGKSEAWKRRRRIGGYEDRNGQGSIDRXXXXXXXXXXXXXXXSKFQDPSSAGILGCGPGDHRRVVGERWNRPHPN-YPLSGQADHAIPRQG
F6HA08_______________EAAPTEAQIELFDALIDGCREAVKEGNLDPKGPMLDFFGVPVKANEVLNRVQELQLLAKRISRYEDPIAQFRVLMYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRASALLEMELVAVGGKNTNTKASRKTSKKEKERENLMNISISRSKDRKGKPGFPVTN-----VQMRKDRSHKPHRVEPLVKEEGEMSG---------NEEVYEQFREVKWMEWCEDVMKTEIKTLNRLHKLQTTSANLPKDLVLSKIRKYLQLLGRRIDQIVLEHDKEQYKQDRMIMRLWNYISTFSNLSGEKLRQIHSKLKQEQDEDGGVGSSHVNGSAWGPGDKDSDPGQFPSFHRHGERPPRGYKNMSAYQTAE-----PVSKSHDAGKFEAWKRRRR---------ADNINTHSLTQPLPQRPMSNGSRLPDPNSLGILGSGPTDNRRFGNEKPSRMRQSGYP---------PRQG

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
809		11		88	0.923564
821		87		12	0.992554
822		87	12		0.992554
823	12	87			0.992554
825		87		12	0.992554
826		87	12		0.992554
829		12		87	0.992554
830	12		87		0.992554
836	12	87			0.992554
840	87			12	0.992554
847		87	12		0.992554
927	75			25	1.0
944		90	10		0.90298
956		11		88	0.923564
957	88	11			0.923564
958		12		87	0.992554
959	11	88			0.923564
969	87			12	0.992554
970		87	12		0.992554
973	90		10		0.90298
975			10	90	0.90298
980	10			90	0.90298
982		90	10		0.90298
986	10		90		0.90298
988			10	90	0.90298
989	10			90	0.90298
991		90	10		0.90298
1033	10	90			0.90298
1035	10			90	0.90298
1036			90	10	0.90298
1078		11		88	0.923564
1148		12		87	0.992554
1149	87			12	0.992554
1150	87			12	0.992554
1152		12	87		0.992554
1154		87		12	0.992554
1158	87			12	0.992554
1161			87	12	0.992554
1162		12	87		0.992554
1342	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain