SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24714

Length: 2663 nt

UniGene Fasta

>sp_v3.0_unigene24714
AGGTAAGGGAAGGGGAGACAGTGTAAACGCAGCCGTAGGAAGCAAAAGGGTAGGAGAGGGGCCTCGTGCAAGAATGATGATCGATTCCACCAACATGGATTCCTTCGTATATATTATTAATTCATCTCAATCATCCTTTCTCTCGTGTTTTCTTAACAGGAATTGAACTCTGAGCATCCAGGTCGTCGAAATAATGCACTACTACAAAGAAAGATCACAGCAGGAAGAGGAGGAAGAAGCAGCAGCCGAGGGATCGTTTCAGCAGAGGTGGAGCTTGTGCGGCCTCAGGATGGGGTGCCGATGTTCTAAATTCACGCTGTGCTGGTGGCCACGCCACGCAAAGTCTTCAACTTTAGAAACTTCCGACATCGGCGAGAATGGACGTCGGAACGAGACTGATTCGTTGCCCGCTTATAGAGAATTCTCGCTCGACCAGCTTAGGGTCGCTACGAACGGTTTCAGCTCCGAGAACATAGTTTCCGAGCACGGGGAAAAGGCCCCTAACGTGGTTTACAAAGGCAGGCTCGAAAGCAACCGTCCGATTGCAGTTAAGCGGTTTCAGAAAACAGCTTGGCCTGTTGCATGGCAGTTTCTGGAGGAAGCAAGAGCTGTGGGTCAACTTCGCCACGAGAGATTGGTGAATTTAATAGGATGCTGTTGCGATGGTGATGAGCGTTTGCTTGTGGCTGAATATATGCCAAATGACACTCTAGCAAAGCATCTCTTCCATTCTCATGCAGAGTGCGAAGACCCAGGGGAGGTGCAACCTATGCAGTGGGCAATGCGCTTGAGGGTTGCACTTCACTTGGCACAAGCATTAGAATATTGTAGCAGCAAAGGCAGAGCTCTCTATCATGACCTTAATGCTTATAGAGTTCTGTTTGACCAGGATGGCAATCCCAGGCTTTCATGCTTTGGTCTGATGAAGAACAGTAGAGATGGGAAAAGTTATAGCACAAATTTGGCTTTTACTCCTCCAGAGTACCTGAGAACTGGAAGAATAACATCTGAAAGTGTAATCTATAGTTTTGGTACACTTCTGCTGGATCTCTTAAGTGGAAAGCATATTCCACCAAGTCATGCCCTTGATCTCATAAGAGGTAGGAACTTTTTGCTGCTGATGGACTCTTGTCTAGAAGGTGATTTCTCTAATGACGATGGAACTGAACTGGTACGTTTGGCTTCACGTTGCTTACAATATGAACCTCGTGAGAGGCCAAATGCAAAATCTCTTGTGGCGGCACTTTCTTCGCTTCAGAAACAGACAGAGGTTGCATCATATGTCTTGATGGGGATAACAAGGGAAGATGCTGACCAGACACTCGTTTTATCTCCACTTGGTGATGCATGTTCTAGAATGGATCTCACTGCTATACATGAAATATTGGAAAAAGTTGGATACAAGGATGATGAAGGAACAACTAATGAGCTGTCATTTCAAATGTGGACGAAACAAATGCAGGAGACTCTGAACTCAAAGAAACAGGGAGATTCTGCATTTCGAGCAAAAGATTTCGTAACTGCAATTGATTGTTATACCCAGTTCATTGAGGTTGGAACCATGGTGTCACCCACAGTCCTTGCAAGACGTAGTTTGTCTTACCTTATGAGTGACATGCCACGGGAAGCTCTTGGTGATGCAATGCAAGCTCAAGTTGTGTACCCAGAATGGCCAACAGCATTTTATCTTCAAGCTTCTGCCCTTTCTTTTTTAGGAATGAAACGTGATGCCCAAGAAATGCTGAAGGATGGTGCAGCAATTGAAGCAAAAATAAAAGTATGATATCTGGATGGTGAGTAATGATCAGAATTAGAGATGCGGGATAATCAAAATCCATGCATCTGTTTCTATTGTGTATGCTGATTGCATGTAGCTTGTCAAGCTGCCCACATGATTGCTGCTGAATGCACAGCATAATATATCTTGATTGCCCTCAGATGGTGAAATGAAATCATTGATTGCAACCAGGTTACAGCAGTATGGAAGTGTTGTTTGCGGCCACCAAGGGATTTATATGAGTGAGTCAAATACTTAAATCAGAGTATTCTGGCATTCTGATGGTGTGAAATTTGGCTGATGTTTTGTGTTTTCTGCAAGTTTTATTGAACTCTCCCTCATATGAGGGGTTGGTCGTAGATGCTCACAGTTCTTGTTTTTACTCAGATTCATGCCACCGGCTGGATCATAATTTCAAGTAACTGTAACTTAGCAAGGTCTATTTGTGTGAATAAAGTGGAGTCCAATTCTTATTTATGGAAACGCTGTATAGGAATATGTAAAGTAAGCTTGTTAGTCATTGTAGTTATCATCTCAAGGTAAATTTGTCGTGCAGTTTTGGATATATGTTGACATTCGTTTATTCCACCATTCAGTAAATTATACTGCTTTAAGTACTCCAAATTTGGTTACATCAGTTTTGTCTTCTGGAAGATTTCGTCAGTCAATTGGATAAAGGAAAGTTCAAGGAAGCTATTTTGCTTTATCAAATGGGCAACCATCGAAACTAATAGTAAGTTATGTTACATTTTGTACTGGAACATGGCAGGATTTTGGAACCTTTTGCAGTGTGCTTACTGATTTTCATGGATCTTATTTTTCCACATATCTCATTTCTGGCATGGCAATGGAGGCTTCTTGTTCATTGCTCACTGGTTCTATGATC

Ace file of the UniGene sp_v3.0_unigene24714

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] dbj\|BAB09644.1\| protein kinase-like protein [Arabidopsis thaliana] gb\|AAL91617.1\| AT5g59010/k19m22_210 [Arabidopsis thaliana] gb\|ABH04487.1\| At5g59010 [Arabidopsis thaliana] gb\|AED97129.1\| putative r	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Receptor protein kinase, putative	-	-	1.97e-20	-

Source	Gene names
Sma3	ACRE261; AT4g00710; At2g17090; At2g17170; At3g09240; At3g54030; At3g54030/F5K20_330; At4g00710; At4g00710/F6N23.9; At4g35230; At5g01060; At5g41260; At5g46570; At5g59010; F23E12.210; F3L24.11; F5K20_330; F6N23.9; F7J8_40; F8A12.21; GSVIVT00000416001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain chr5:23820578-23823099 REVERSE LENGTH=489	75%
RefSeq	Arabidopsis thaliana	NP_200709.2	putative receptor protein kinase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002322938.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S6

Fln msg: your sequence is longer than subject: 530 - 487

Fln protein: MHYYKERSQQEEEEEAAAEGSFQQRWSLCGLRMGCRCSKFTLCWWPRHAKSSTLETSDIGENGRRNETDSLPAYREFSLDQLRVATNGFSSENIVSEHGEKAPNVVYKGRLESNRPIAVKRFQKTAWPVAWQFLEEARAVGQLRHERLVNLIGCCCDGDERLLVAEYMPNDTLAKHLFHSHAECEDPGEVQPMQWAMRLRVALHLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITSESVIYSFGTLLLDLLSGKHIPPSHALDLIRGRNFLLLMDSCLEGDFSNDDGTELVRLASRCLQYEPRERPNAKSLVAALSSLQKQTEVASYVLMGITREDADQTLVLSPLGDACSRMDLTAIHEILEKVGYKDDEGTTNELSFQMWTKQMQETLNSKKQGDSAFRAKDFVTAIDCYTQFIEVGTMVSPTVLARRSLSYLMSDMPREALGDAMQAQVVYPEWPTAFYLQASALSFLGMKRDAQEMLKDGAAIEAKIKV*

Protein Length: 531

Fln nts: AGGTAAGGGAAGGGGAGACAGTGTAAACGCAGCCGTAGGAAGCAAAAGGGTAGGAGAGGGGCCTCGTGCAAGAATGATGATCGATTCCACCAACATGGATTCCTTCGTATATATTATTAATTCATCTCAATCATCCTTTCTCTCGTGTTTTCTTAACAGGAATTGAACTCTGAGCATCCAGGTCGTCGAAATA_-_ATGCACTACTACAAAGAAAGATCACAGCAGGAAGAGGAGGAAGAAGCAGCAGCCGAGGGATCGTTTCAGCAGAGGTGGAGCTTGTGCGGCCTCAGGATGGGGTGCCGATGTTCTAAATTCACGCTGTGCTGGTGGCCACGCCACGCAAAGTCTTCAACTTTAGAAACTTCCGACATCGGCGAGAATGGACGTCGGAACGAGACTGATTCGTTGCCCGCTTATAGAGAATTCTCGCTCGACCAGCTTAGGGTCGCTACGAACGGTTTCAGCTCCGAGAACATAGTTTCCGAGCACGGGGAAAAGGCCCCTAACGTGGTTTACAAAGGCAGGCTCGAAAGCAACCGTCCGATTGCAGTTAAGCGGTTTCAGAAAACAGCTTGGCCTGTTGCATGGCAGTTTCTGGAGGAAGCAAGAGCTGTGGGTCAACTTCGCCACGAGAGATTGGTGAATTTAATAGGATGCTGTTGCGATGGTGATGAGCGTTTGCTTGTGGCTGAATATATGCCAAATGACACTCTAGCAAAGCATCTCTTCCATTCTCATGCAGAGTGCGAAGACCCAGGGGAGGTGCAACCTATGCAGTGGGCAATGCGCTTGAGGGTTGCACTTCACTTGGCACAAGCATTAGAATATTGTAGCAGCAAAGGCAGAGCTCTCTATCATGACCTTAATGCTTATAGAGTTCTGTTTGACCAGGATGGCAATCCCAGGCTTTCATGCTTTGGTCTGATGAAGAACAGTAGAGATGGGAAAAGTTATAGCACAAATTTGGCTTTTACTCCTCCAGAGTACCTGAGAACTGGAAGAATAACATCTGAAAGTGTAATCTATAGTTTTGGTACACTTCTGCTGGATCTCTTAAGTGGAAAGCATATTCCACCAAGTCATGCCCTTGATCTCATAAGAGGTAGGAACTTTTTGCTGCTGATGGACTCTTGTCTAGAAGGTGATTTCTCTAATGACGATGGAACTGAACTGGTACGTTTGGCTTCACGTTGCTTACAATATGAACCTCGTGAGAGGCCAAATGCAAAATCTCTTGTGGCGGCACTTTCTTCGCTTCAGAAACAGACAGAGGTTGCATCATATGTCTTGATGGGGATAACAAGGGAAGATGCTGACCAGACACTCGTTTTATCTCCACTTGGTGATGCATGTTCTAGAATGGATCTCACTGCTATACATGAAATATTGGAAAAAGTTGGATACAAGGATGATGAAGGAACAACTAATGAGCTGTCATTTCAAATGTGGACGAAACAAATGCAGGAGACTCTGAACTCAAAGAAACAGGGAGATTCTGCATTTCGAGCAAAAGATTTCGTAACTGCAATTGATTGTTATACCCAGTTCATTGAGGTTGGAACCATGGTGTCACCCACAGTCCTTGCAAGACGTAGTTTGTCTTACCTTATGAGTGACATGCCACGGGAAGCTCTTGGTGATGCAATGCAAGCTCAAGTTGTGTACCCAGAATGGCCAACAGCATTTTATCTTCAAGCTTCTGCCCTTTCTTTTTTAGGAATGAAACGTGATGCCCAAGAAATGCTGAAGGATGGTGCAGCAATTGAAGCAAAAATAAAAGTATGA___TATCTGGATGGTGAGTAATGATCAGAATTAGAGATGCGGGATAATCAAAATCCATGCATCTGTTTCTATTGTGTATGCTGATTGCATGTAGCTTGTCAAGCTGCCCACATGATTGCTGCTGAATGCACAGCATAATATATCTTGATTGCCCTCAGATGGTGAAATGAAATCATTGATTGCAACCAGGTTACAGCAGTATGGAAGTGTTGTTTGCGGCCACCAAGGGATTTATATGAGTGAGTCAAATACTTAAATCAGAGTATTCTGGCATTCTGATGGTGTGAAATTTGGCTGATGTTTTGTGTTTTCTGCAAGTTTTATTGAACTCTCCCTCATATGAGGGGTTGGTCGTAGATGCTCACAGTTCTTGTTTTTACTCAGATTCATGCCACCGGCTGGATCATAATTTCAAGTAACTGTAACTTAGCAAGGTCTATTTGTGTGAATAAAGTGGAGTCCAATTCTTATTTATGGAAACGCTGTATAGGAATATGTAAAGTAAGCTTGTTAGTCATTGTAGTTATCATCTCAAGGTAAATTTGTCGTGCAGTTTTGGATATATGTTGACATTCGTTTATTCCACCATTCAGTAAATTATACTGCTTTAAGTACTCCAAATTTGGTTACATCAGTTTTGTCTTCTGGAAGATTTCGTCAGTCAATTGGATAAAGGAAAGTTCAAGGAAGCTATTTTGCTTTATCAAATGGGCAACCATCGAAACTAATAGTAAGTTATGTTACATTTTGTACTGGAACATGGCAGGATTTTGGAACCTTTTGCAGTGTGCTTACTGATTTTCATGGATCTTATTTTTCCACATATCTCATTTCTGGCATGGCAATGGAGGCTTCTTGTTCATTGCTCACTGGTTCTATGATC

Fln Alignment:

Contig24714___MGCRCSKFTLCWWPRHAKSSTLETSDIGENGRRNETDSLPAYREFSLDQLRVATNGFSSENIVSEHGEKAPNVVYKGRLESNRPIAVKRFQKTAWPVAWQFLEEARAVGQLRHERLVNLIGCCCDGDERLLVAEYMPNDTLAKHLFHSHAECEDPGEVQPMQWAMRLRVALHLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITSESVIYSFGTLLLDLLSGKHIPPSHALDLIRGRNFLLLMDSCLEGDFSNDDGTELVRLASRCLQYEPRERPNAKSLVAALSSLQKQTEVASYVLMGITREDADQTLVLSPLGDACSRMDLTAIHEILEKVGYKDDEGTTNELSFQMWTKQMQETLNSKKQGDSAFRAKDFVTAIDCYTQFIEVGTMVSPTVLARRSLSYLMSDMPREALGDAMQAQVVYPEWPTAFYLQASALSFLGMKRDAQEMLKDGAAIEAK
D5A9S6_______________MGCLQSKTSNM--PTPDEESVENEKPNQENDDQFETERVPSFKEYALADLKAATRGFSSEYIVSEGGEKAPNVVFKGKLENNRWIAVKRFPKQSWPDARQFAAEAAGVGRVRHKRLVNLIGFCSEADERLLVAEFMPYDTLSKHLFH--------WEKQPMPWAMRLRVAYYIAQALDHCNSENHRIYHDLNTYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLVLMDSSLDGQYANEDATELVGLASRCLQSEPRDRPNAKFLVTALAPLQMQIEVPSDVLMGITKVTASLPVMLSPLGKACARMDLTAVHDVLVKTGYKDDEGAENELSFQEWTQQVQEMLNMKKCGDIAFRDKDFKTAIEYYSKLVNVMTIPSPTVFARRSLAYLMSDQPQLALRDAMQAQVCQPEWPTAFYMQAISLAKLGMERDSQDMLREGATLEAK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1388	33		66		0.997452
1513	11			88	0.923564
1515			11	88	0.923564
1516		90		10	0.90298
1540		20		80	0.999996
1603		88		11	0.923564
1634		12	87		0.992554
1635	12		87		0.992554
1637			87	12	0.992554
1690	16			83	0.994512
1693	83			16	0.994512
1694			83	16	0.994512
2315	86		13		0.999973
2398	20	80			0.995493
2400	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain