SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24696

Length: 1090 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24696

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Glutamate decarboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutamate decarboxylase.	EC:4.1.1.15	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	beta-Alanine metabolism	00410	%
Sma3	Butanoate metabolism	00650	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g65960; At2g02000; At2g02000/F14H20.7; At2g02010; At3g17760; At5g17330; B1377B10.13; F12P19.12; GAD; GAD1; GAD2; GAD3; GAD4a; GAD4b; GDC; GDH1; GDH2; GSVIVT00006041001; GSVIVT00023484001; GSVIVT00023485001; GSVIVT00030677001; GSVIVT00030679001; LOC_Os0

Source	GOs	Term	Type	Identity
Sma3	glutamate decarboxylase activity	GO:0004351	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	carboxy-lyase activity	GO:0016831	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	glutamate metabolic process	GO:0006536	Biological Process	-
Sma3	carboxylic acid metabolic process	GO:0019752	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Glutamate decarboxylase	IPR010107	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G02000.1	GAD3 glutamate decarboxylase 3 chr2:469505-471997 REVERSE LENGTH=500	72%
RefSeq	Arabidopsis thaliana	NP_176771.2	glutamate decarboxylase 2 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002305926.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTD1

Fln msg: your sequence is shorter than subject: 251 - 509

Fln protein: IFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMRNCEANAKALADGLVRTGRFNILSKEVGVPLVAFSLKDSSRHDVYEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVIRDDFNRSLAERLVRDIEKVLRELDALPSKIVREVTASLVESHPELKEEKDIEETARLKSCHVVDEIVSCRRAAEEKKKFVSVEQKPNRIC*

Protein Length: 252

Fln nts: ATTTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAACTTCTCCAAAGGGGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGATATCGTAACATCATGCGTAACTGCGAAGCAAACGCGAAGGCTCTGGCCGATGGTTTGGTGAGGACCGGGCGGTTCAACATACTGTCGAAAGAGGTGGGGGTTCCTCTAGTGGCGTTTTCGCTCAAGGACAGTAGCAGGCACGATGTGTATGAGATCTCTGACCACCTGAGAAGGTTCGGGTGGATCGTGCCCGCCTACACCATGGCTCCCGACGCACAGCACGTAACCCTTCTGCGCGTGGTGATTCGCGACGATTTCAACCGCAGTCTCGCAGAACGACTGGTTCGGGACATAGAGAAAGTGTTGCGGGAACTTGACGCGCTTCCTTCAAAGATAGTGAGGGAAGTGACGGCATCTCTGGTAGAAAGCCATCCTGAACTCAAAGAAGAGAAAGATATAGAGGAGACTGCGAGGTTGAAGTCGTGTCATGTGGTGGACGAGATTGTTAGCTGTCGCAGAGCGGCCGAAGAGAAGAAGAAATTTGTTTCTGTTGAGCAGAAGCCCAATCGGATTTGTTGA___AAACCATTGAAGTAGCTCTTCATATTTATTTTATGTCTCCATTTTTCATCGAATTAGTCGGCTTAGCCATCGTTTTAGGCGCCCGGGTAGGTTTCATCAATTTTGTAAGAAGAAATAAATTTTCCATAGAGAGGCTTATTACTAGTAATCATATTATAAGTAAGTTACATTGTCAACGGTGTACTTGTATTTTGGAGTCTATAGATTCGAACAGAAACCAGAGTTACTTGACCAAGTTTTAACTCCGAGAAATCAGAGTGACAATCCTAAGTTGCATAGAAAGTTTTTGTACTTCAACTAAATGGCTGTAAGTTATATATAAAAGTCTTTCTTAGAT

Fln Alignment:

Contig24696___FRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMRNCEANAKALADGLVRTGRFNILSKEVGVPLVAFSLKDSSRHDVYEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVIRDDFNRSLAERLVRDIEKVLRELDALPSKIVREVTASLVESHPELKEEKDIE-ETARLKSCHVVDEIVSCRRAAEEKKKFVSVEQKPNRIC
C0PTD1_______________FRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMSNCAANAKALADGLVRTGRFDILSKEVGVPLVAFSLKDNSKHDEYEIADHLRRYGWIVPAYTMAPDAQQVTLLRVVVREDFNRSLAERLVRDIEKVLHELDALPSKLVTEVTASLVESHPELKEVKDIDIDSTKLNSCHVFNEVLNSQKAVKAWKKFVA--QKANRVC

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
933			83	16	0.999991
1025	77			22	0.999999
1029		22	77		0.999999
1032			22	77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain