SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24477

Length: 2108 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24477
GTGACCACAGTCTACTTTGCGAGTGAGAGCACAACAGGTGACTATAGCTAAAGAAGCAGATGGTAGAGCAGAGATCGATAGTGTGGCTAAAATGTCAATGGTTATCCAGCCACCTTCGGCAGGTCTTCTGAGTACCAGCAGAACACCCGTTGCCAATCTTTTTCTCTGCCCAAAGCGTACTCGCAATGGTGCCACTGTACGCCCCCGTGCTGCTTCGTCATCCATCTCAACACAGCCACAACCGCAGCCACAACCACAGCAGTATAAGAAACAGAAGGGACCTGATACTCGAACGCCCAAAGCTGAGGGAATAACCCCGCGCTCTCAGGATTTCAATGCGTGGTATTTAGACATCATAGCAGCGGCAGAACTAGCTGACTACGGTCCTGTAAGGGGCACCATGGTCATACGACCCTATGGTTACGCCATTTGGGAATTCATCCAGGCATATTTGGATCCCATATTCAAGGAAACTGGTCACAGCAACATGTATTTCCCTCAGTTCATTCCTTACTCTTTTATTGAAAAAGAAGCTAGCCACGTGGAAGGTTTCAGTCCAGAGCTTGCCTTGGTGACCATTGGTGGCGGGAAGGAACTGGAAGAGAAGCTTGTGGTACGACCAACAAGTGAAACCATTGTAAATCACATGTTTACTCAATGGGTTCATAGCTATCGTGATCTTCCACTTATGATTAATCAGTGGGCAAACGTTACGAGATGGGAAATGCGTACAAAACCATTTGTGCGAACACTTGAATTCTTATGGCAAGAAGGTCATACAGCTCATGCCACAGAGGAAGAGGCAGAGAAAGAGGCTTTGCAGATGATTGAGGTATACCATAAATTTGCTTGTGAACAAGCAGCCATGCCTGTTATAGTTGGCCGCAAATCGAGAGCAGAGACATTTGCTGGTGCTCTTCGCACCTATACCATAGAAGCAATGATGGGTGATTGCAAGGCTTTGCAAGCTGGAACTAGTCACAATCTTGGGCAAAATTTTTCTCGTGTATTTGGTACTCAGTTCACTGATGAAAATGGACAGCGACAATATGTATGGCAAACTTCTTGGGCAGTAAGCACACGCATGGTGGGTGGCATTATTATGACTCATGGTGATGATACAGGCTTGATGCTTCCACCAAGGATGGCTCCAATACAGGTAGTTATTATTCCAATATGGAAGAAGGCCGATGAGAAAGGTGTGATCTTGGAGGTAGCGTCTAACCTAGAGAAGATACTTAAGACTGCCGGCATCAGGGTCAAAATGGATGAGTCAGATCTGAAGACTGCAGGGTGGAAATTCAATTTCTGGGAAATGAAGGGTGTTCCATTAAGGATTGAAGTTGGTCCTCGTGATGTCTTAAATAAGAGTGTTGTAATTTCAAGGCGGGATATGCCTGGAAAAGATGGGAAAGATTTTGGAATATCGATGGATCCATCATTTTTAGTAGTATATATAAGAGACAAACTGGAAGAAGTGCAATCGGCGCTCTTGGCAAGAGCTACAGCCTTCCGAGACAGCAACATTGTAAATGTAGAATCTTATGAGGAACTTAAAGCAGCGATTTCTGATGGAAAATGGGCAAGAGGTCCTTGGGCAGCAAGTGATTTTGAAGAGTCAAAGGTGAAAGAAGAGACAGGTGCAACAATACGATGTTTCCCCTTTGATCAGCCACCTGGAAATAAAGCTTGTTTAATGACTGGAAAACCTGCAGATGAAATTGCAATCTTTGCAAAATCTTATTAACATCAAATGTATATATCATGTGTGACATGGATAACTTTTCCTTTTATTTTTTTCAAATTCAAATCAGCTACAGGATACCGAGAGAAGCACATTTTTTTGGTATTGTGCCATGTCACTGGAATGCCAGTCTTACCTAAATTTGATGATGGGCCATTATCACTATCAATCACACATGATTTTGCAACCTTTGTGAAATACTGGAAATTCCATTCTTACCAAAATACTATCTGATGATTTCTTTGAACCTCTCCTAGAGGCTCATTGCCATACCATTATATGGTGTTGTAAATTGTTATTTGCTATGATTTTTTCCAACCATGTTCTTATTCACATAAATGACAAGAGACCTTTGTGCAGTTTG

Ace file of the UniGene sp_v3.0_unigene24477 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	prolyl-tRNA synthetase [Raphanus sativus]	-	-	0.0	70%
FL-Next	tr=Prolyl-tRNA synthetase, putative; Ricinus communis (Castor bean).	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Sma3	Proline--tRNA ligase.	EC:6.1.1.15	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		0.0	%

Source	Gene names
Sma3	RCOM_1582810;

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Prolyl-tRNA synthetase, class IIa	IPR002316	-	-
Sma3	Prolyl-tRNA synthetase, class IIa, archaeal-type	IPR004499	-	-
Sma3	Prolyl-tRNA synthetase, class II, C-terminal	IPR016061	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52520.1	OVA6, PRORS1 Class II aaRS and biotin synthetases superfamily protein chr5:21311112-21313875 FORWARD LENGTH=543	72%
RefSeq	Arabidopsis thaliana	NP_200065.1	prolyl-tRNA synthetase [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002327471.1	predicted protein, partial [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RIU3

Fln msg:

Fln protein: MSMVIQPPSAGLLSTSRTPVANLFLCPKRTRNGATVRPRAASSSISTQPQPQPQPQQYKKQKGPDTRTPKAEGITPRSQDFNAWYLDIIAAAELADYGPVRGTMVIRPYGYAIWEFIQAYLDPIFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWVHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATEEEAEKEALQMIEVYHKFACEQAAMPVIVGRKSRAETFAGALRTYTIEAMMGDCKALQAGTSHNLGQNFSRVFGTQFTDENGQRQYVWQTSWAVSTRMVGGIIMTHGDDTGLMLPPRMAPIQVVIIPIWKKADEKGVILEVASNLEKILKTAGIRVKMDESDLKTAGWKFNFWEMKGVPLRIEVGPRDVLNKSVVISRRDMPGKDGKDFGISMDPSFLVVYIRDKLEEVQSALLARATAFRDSNIVNVESYEELKAAISDGKWARGPWAASDFEESKVKEETGATIRCFPFDQPPGNKACLMTGKPADEIAIFAKSY*

Protein Length: 553

Fln nts: GTGACCACAGTCTACTTTGCGAGTGAGAGCACAACAGGTGACTATAGCTAAAGAAGCAGATGGTAGAGCAGAGATCGATAGTGTGGCTAAA_-_ATGTCAATGGTTATCCAGCCACCTTCGGCAGGTCTTCTGAGTACCAGCAGAACACCCGTTGCCAATCTTTTTCTCTGCCCAAAGCGTACTCGCAATGGTGCCACTGTACGCCCCCGTGCTGCTTCGTCATCCATCTCAACACAGCCACAACCGCAGCCACAACCACAGCAGTATAAGAAACAGAAGGGACCTGATACTCGAACGCCCAAAGCTGAGGGAATAACCCCGCGCTCTCAGGATTTCAATGCGTGGTATTTAGACATCATAGCAGCGGCAGAACTAGCTGACTACGGTCCTGTAAGGGGCACCATGGTCATACGACCCTATGGTTACGCCATTTGGGAATTCATCCAGGCATATTTGGATCCCATATTCAAGGAAACTGGTCACAGCAACATGTATTTCCCTCAGTTCATTCCTTACTCTTTTATTGAAAAAGAAGCTAGCCACGTGGAAGGTTTCAGTCCAGAGCTTGCCTTGGTGACCATTGGTGGCGGGAAGGAACTGGAAGAGAAGCTTGTGGTACGACCAACAAGTGAAACCATTGTAAATCACATGTTTACTCAATGGGTTCATAGCTATCGTGATCTTCCACTTATGATTAATCAGTGGGCAAACGTTACGAGATGGGAAATGCGTACAAAACCATTTGTGCGAACACTTGAATTCTTATGGCAAGAAGGTCATACAGCTCATGCCACAGAGGAAGAGGCAGAGAAAGAGGCTTTGCAGATGATTGAGGTATACCATAAATTTGCTTGTGAACAAGCAGCCATGCCTGTTATAGTTGGCCGCAAATCGAGAGCAGAGACATTTGCTGGTGCTCTTCGCACCTATACCATAGAAGCAATGATGGGTGATTGCAAGGCTTTGCAAGCTGGAACTAGTCACAATCTTGGGCAAAATTTTTCTCGTGTATTTGGTACTCAGTTCACTGATGAAAATGGACAGCGACAATATGTATGGCAAACTTCTTGGGCAGTAAGCACACGCATGGTGGGTGGCATTATTATGACTCATGGTGATGATACAGGCTTGATGCTTCCACCAAGGATGGCTCCAATACAGGTAGTTATTATTCCAATATGGAAGAAGGCCGATGAGAAAGGTGTGATCTTGGAGGTAGCGTCTAACCTAGAGAAGATACTTAAGACTGCCGGCATCAGGGTCAAAATGGATGAGTCAGATCTGAAGACTGCAGGGTGGAAATTCAATTTCTGGGAAATGAAGGGTGTTCCATTAAGGATTGAAGTTGGTCCTCGTGATGTCTTAAATAAGAGTGTTGTAATTTCAAGGCGGGATATGCCTGGAAAAGATGGGAAAGATTTTGGAATATCGATGGATCCATCATTTTTAGTAGTATATATAAGAGACAAACTGGAAGAAGTGCAATCGGCGCTCTTGGCAAGAGCTACAGCCTTCCGAGACAGCAACATTGTAAATGTAGAATCTTATGAGGAACTTAAAGCAGCGATTTCTGATGGAAAATGGGCAAGAGGTCCTTGGGCAGCAAGTGATTTTGAAGAGTCAAAGGTGAAAGAAGAGACAGGTGCAACAATACGATGTTTCCCCTTTGATCAGCCACCTGGAAATAAAGCTTGTTTAATGACTGGAAAACCTGCAGATGAAATTGCAATCTTTGCAAAATCTTATTAA___CATCAAATGTATATATCATGTGTGACATGGATAACTTTTCCTTTTATTTTTTTCAAATTCAAATCAGCTACAGGATACCGAGAGAAGCACATTTTTTTGGTATTGTGCCATGTCACTGGAATGCCAGTCTTACCTAAATTTGATGATGGGCCATTATCACTATCAATCACACATGATTTTGCAACCTTTGTGAAATACTGGAAATTCCATTCTTACCAAAATACTATCTGATGATTTCTTTGAACCTCTCCTAGAGGCTCATTGCCATACCATTATATGGTGTTGTAAATTGTTATTTGCTATGATTTTTTCCAACCATGTTCTTATTCACATAAATGACAAGAGACCTTTGTGCAGTTTG

Fln Alignment:

Contig24477___AASSSISTXXXXXXXXXXXXXXKGPDTRTPKAEGITPRSQDFNAWYLDIIAAAELADYGPVRGTMVIRPYGYAIWEFIQAYLDPIFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWVHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQXXXXXXXXXXXXXXXALQMIEVYHKFACEQAAMPVIVGRKSRAETFAGALRTYTIEAMMGDCKALQAGTSHNLGQNFSRVFGTQFTDENGQRQYVWQTSWAVSTRMVGGIIMTHGDDTGLMLPPRMAPIQVVIIPIWKKADEKGVILEVASNLEKILKTAGIRVKMDESDLKTAGWKFNFWEMKGVPLRIEVGPRDVLNKSVVISRRDMPGKDGKDFGISMDPSFLVVYIRDKLEEVQSALLARATAFRDSNIVNVESYEELKAAISDGKWARGPWAASDFEESKVKEETGATIRCFPFDQPPGNKACLMTGKPADEIAIFAKSY
B9RIU3_______________SASSSFSIQSAASSPPETEDRVANLKSRINQDRAVTPRSEDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEALQMIDVYTKFAYEQAAIPVIAGRKSKVETFAGAVRTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPKIAPIQVVIVPIWKKDTEKAGVLNAASSVREVLQSSGLKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSSLLGRAMSFRESHIVDVSSYGELKEAISLGKWARGPWSASDADELRVKEETGATIRCFPFEQPQGTKTCLMTGKPAEEVAIFAKSY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
178		14		85	0.993533
625		10	90		0.90298
681		75		25	1.0
1060	16			83	0.994512
1208		16		83	0.994512
1223	20			80	0.999996
1224	20		80		0.999996
1225		80		20	0.999996
1227			80	20	0.999996
1255		10		90	0.90298
1436	11		88		0.923564
1439	88			11	0.923564
1638	33			66	0.997452
1929	66		33		0.997452
1969		66	33		0.997452
1987		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain