SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24460

Length: 1831 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene24460 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 n=35 Tax=Magnoliophyta RepID=NU4M_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	NADH-ubiquinone oxidoreductase chain 4	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AtMg00580; GSVIVT00035662001; HAM_041; MicpuC_mit41; MicpuN_mit24; NAD4; ND4; OtMtg00350; POPTRDRAFT_559626; RCOM_0973470; nad4; nd4;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00580.1	NAD4 NADH dehydrogenase subunit 4 chrM:161693-169674 FORWARD LENGTH=495	0.0	79%
RefSeq	Arabidopsis thaliana	NP_085518.1	NADH dehydrogenase subunit 4 (mitochondrion) [Arabidopsis thaliana]	0.0	79%
RefSeq	Populus trichocarpa	XP_002307621.1	predicted protein [Populus trichocarpa]	1.0e-19	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT08

Fln msg: your sequence is longer than subject: 175 - 57

Fln protein: MLLPFRECYFDLSGLILCPVLGSIILLFIPNSRIRLIRFIGLCASLLTFLYSLVLWIQFDSSTAEFQFVGTIRWLPYENINLYMGIDGISLFFVVLTTFLIPICILVGWSSTESYGKEYVIVFLICEFLMIAVFCMLDLLLFYVFFESVLIPMLCGAEHLIFAGVPTLCRSLVQ*

Protein Length: 176

Fln nts: TATATTTGCTGTGGTAACCGCATTAAGCATCATTACCATAATGGCAGCACCCAGTGCGATCGCTAAAGCATTGACTCCCTATATGCATTCTCTGCTAAAGCGTAATTACATATGGTAATTCATGATTGGATTCGATAGCGTAATTACGTATGTAACGAATGAATGCATAATGACATATGCCCATATATGCATTCACTCTCTATCGATCGAATCTGGTATGACACATATCTCATTCATTCATGCATAATGACATATGCCCATATATGCATTGTCTGCTAAAGCGAAATGACATATATCGAGTCATGCCGTAATTACTGCTATAATTCATGAATGCATAATGACATATGCCCATAGGAGCGTTGTCCGCTAAAGTGTAATTACGGCAGAAATGCATAATGACATATGCCCATAGCAGCTTCGGGCAGGGGAGATGGAGCAGGAGGGAGGACATATTGATAAGGGACAGGGTGGGTATGAGTTCCCGGAAAAGCCTTCCCTCTTCTTCCCCTTATCAACGGTGTTCAGCTGACTTGCACTGATAGACTCTTATTGAAACTAGGCGCCTCATCTTTCTCTATTGCCAACTAATCCCTTCAATGTTCAATTCGT_-_ATGTTACTACCTTTTCGTGAATGCTATTTTGATCTAAGTGGTCTTATTCTGTGTCCCGTGCTGGGGAGCATTATTCTTCTTTTCATTCCAAATTCAAGAATACGACTGATACGATTTATTGGTCTGTGCGCCTCTCTTCTCACTTTCTTGTACTCTCTTGTTCTCTGGATACAATTTGATTCTTCTACGGCCGAATTCCAATTTGTGGGAACCATTCGATGGCTTCCTTATGAAAACATCAATTTGTATATGGGTATAGATGGTATCTCCTTATTCTTTGTGGTATTGACCACATTTTTAATCCCTATTTGCATTTTAGTAGGTTGGTCCAGTACGGAAAGTTATGGGAAAGAGTATGTTATAGTATTTCTAATTTGCGAATTTCTCATGATTGCCGTGTTTTGCATGCTGGATCTTTTACTATTTTATGTTTTTTTCGAAAGCGTGCTAATCCCTATGTTGTGCGGAGCTGAGCATCTTATATTCGCTGGGGTACCCACCCTCTGCAGGAGCCTTGTGCAGTAA___ACCCCCTACGGGCGGATCGTCCGTCGTCGTCAAATTGAGTAGTCCCCGCGAAGCTCTCGGGAAGAAGGGTAGTCTTGTGTGTAGGCATAGCATTTCCGGTCGAACCCGTCAGATGACAGACATCTATCTATTTCTTGGGATCGTGGGGTACTCCGCTCCGATGGGTACCTCGCACGTCAAACCTCAACCCGCCTACTCGAGTATTGTATGGATATGCGGGAAAGGGTGCTCCTAGGTGTAGGGATTGTGCCTGGTCGCGAGAAGTCATTCCTCGTAAAGCCTGGGATGCAGATACACTTGCGCGAATTCGGGTGACGGCTACAAGGAAGGGTGGCGAGGAAGATAAAGGGAACTGTACCCGACCAGGGATGGACGTAAACTCGTAAGCTATCAATTGGGTTTACAGGGATAATCGTCCTGGTCCTCCACAAAGCGCCCGGGTTGGTTCCTTCCTCTGTCGTGCGTGGGAAGCTCTTGAGGAGGGAGTAGGATGAGTTGCTAAAACGAACGAAATGGAGGATCGACCCGTTATGATTACGAAGACAGACTGTTGCATTGGCTGGCCAGCCGAGGGGGGCTCGGTATATCTAAATCTGAGCAAGCAAAAAGAATAGATTGGTTCGATAAGAGGGTCCCCCAACTTGGATCACCTTAATAGAAAGCCCCAACATCCATTATAATGAACCCGATACCTACG

Fln Alignment:

Contig24460___MLLPFRECYFDLSGLILCPVLGSIILLFIPNSRIRLIRFIGLCASLL
A9NT08_______________MLLPFRECYSDLSGPILCPVLGSIIPLSIPNSRIRLIRFIGLCASIL

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
495	86	13			0.999973
496	86	13			0.999973
497		13		86	0.999973
565	91			8	0.999766
696	12		87		0.992554
717		12		87	0.992554
718		12	87		0.992554
721			87	12	0.992554
1041	87		12		0.992554
1061	90		10		0.90298
1067	90		10		0.90298
1069	90		10		0.90298
1071	90		10		0.90298
1108	84		15		0.999986
1141	30		60		1.0
1211	90			10	0.90298
1212	90			10	0.90298
1243	10		90		0.90298
1318	14		85		0.993533
1508	9		90		0.999872
1675		6		93	0.999364
1676		6		93	0.999364
1678	6		93		0.999364
1679	6	3		89	0.998304
1680		11		88	1.0
1681	20	60			1.0
1682	20	60		20	1.0
1683	5	52		21	1.0
1686	88		11		0.923564
1691	87	12			0.992554
1694	87		12		0.992554
1697		87		12	0.992554
1702		12	87		0.992554
1704	87	12			0.992554
1706		87	12		0.992554
1709	87	12			0.992554
1710		12	12	75	0.975346
1712	87	12			0.992554
1713		12	12	75	0.975346
1714		14	71	14	0.984337
1717	50	50			1.0
1718	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain