SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24448

Length: 2768 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24448
CACTCCATAATCTAAGATTGGAAAAGTAGGTGTTTCGAATTGAAATGAACTTTAGGTGAGGCATCTTCTCTCGAGAGAAAAGGGGGAAATCGGGATTTCTGGATGAGATTACTTACAGTCATGTCAAGACAGATACAAGCGCTGTGCATATCTATAGTACTCAGTCTGAGCATTGTGATTGTGATTTCTGATTCAATTGATTACGCTTGCAAGGAACATGATGTAAATAGTGTATCATACGGATTCTGCAACACATCGCTGCCTATAAAGGAGCGCGTTGAAGATCTGATAAGGCGTATGACTCTAGAAGAAAAGGTTGGACAGCTGTCGAATGGAGCATCCGATGTGCAGAGGCTGGGAATACCCAGATACGAATGGTGGTCAGAATCATTGCACGGTATTGCAAGTAATGGACCAGGCGTCAATTTCGATGGTCCCATACCCGCAGCAACTATTTTCCCCCAAATCATCCTCTCCGCAGCTTCCTTCAATTCCACTTTGTGGTTTCGCACAGCACAGGCAATAGCAGTTGAAGCTCGAGCAATGTACAATGTTGGACAAGCAGGCTTGACATTCTGGGCACCCAATATAAATATCTTTCGAGACCCTCGCTGGGGAAGAGGTCAGGAAACTGGGGGGGAAGACCCATTATTGACTAGTGAGTTTGCAGTTGCATTTGTAAGGGGTTTTCAAGGCGAAAATGACAGTCATGACACAATGGAGAAGAGTCAGAGAAGCAGAGCTAGGAGGGAGTTAAAAATGGAGGGGCTAAATAGCCTCCAAAGAGAACCGAGTCGCTTAATGCTTTCAGCATGTTGCAAACATTTCACAGCATATGATTTGGATAGTTGGCAAGGTTACGCTCGCTACACCTTCAATGCTGTGGTGTCTGAACAAGACCTGAAAGATACATTCCAACCACCTTTCCAGAGATGTGTGCAAGATGGTCATGCTAGTTGTATGATGTGCTCATACAATCAGCTAAATGGAGTCCCTGTATGTGCAAACTATGACCTTCTCACACAAATGACAAGAAATGACTGGGGCCTTGAAGGGTATATTACTTCAGACTGTGATGCAGTAGCAATCATTTCTGCATTTCAGCACTATGCTACATGTGCAGAAGATGCAGTCACAGATGTTCTGAAAGCAGGGATGGATATCAACTGTGGTACTTATTTGCTTCGAAACACAATGTCAGCAATTAAACAAGGAAAGCTCCATGAATCAGTGATTGATCAATCCCTTTTCAATTTATTCTCAATTCGGATGCGCCTTGGGCTTTTTGATGGTGATCCTAAACAACAGGAATATGGTCATCTTCGACCAGACCATGTCTGTACTAATGAACACTGGCAACTAGCATTAGAAGGCTCCAGACAGGGAATTGTGCTTCTCAAGAACATTGGCAATGCTTTACCAGTGTCGAAAAATAAAATCAACTCTATAGCTGTTATAGGACCTAATGCAAATGCTACGGAAGAAATGCTTGGCGATTATATAGGCATCCCTTGTAATCCTGTTACTCCATTTGTAGCCCTTCAGAATTACATTGGCAATGTATCATTCTCCAAAGGGTGTGAAAATGTGGCCTGCTCTTCCAATGCCAAATTCGGTGAAGCAGTAGATATTGCAGCTAAAGCAGATGCTGTGGTTATTGTTGTGGGGTTGGATCTCACACAGGAAACGGAAGATCATGACAGAGTAAATTTAACCCTCCCAGGGCAACAACAGAGACTAGTATCTGAAGTTGCTGTTGCTTCAAAGGGACCTGTGGTACTTGTTCTCATGTGTGGGGGTCCAGTGGATGTCTCATTTGCAAAGGATGATCCTCGAATTTCAAGTATATTGTGGGTGGGCTATCCTGGTGAAGCTGGAGGCCAAGCACTAGCTGAAATTATTTTTGGAGATTACAATCCAGGTGGCAGGCTACCTATGACATGGTATCCTCAAGAATTTATCAATGTACCTATGACAGACATGAATATGCGACCTAATTCTTCAACAGGCTATCCAGGCCGAACCTACCGGTTTTACACTGGAAAAACAGTCTTCCAATTTGGCGAAGGTTTGAGTTATTCAAACTACTCATACAAATTTTCCTCGAAGGATGGGCATATTATTCTGCCATTTTCTTCACCATCGTACGGAGAGTGGGCATCTGACTACATTGATATAGATGATATACCATGTGAAAGTTTTAAATTTACCACTAAACTTACTGTACAAAACCATGGTAGCATGGATGGGAGTCATGTTGTACTGTTATTTTCAAGATATGGTGGAAATTTCAGAGGAGCTCCACACAAGCAACTAATTGACTTTAAACGTGTCCATATCGTTGCTGGTAAAACCACTGATGTGAGCTTTCTTGTTAATCCTTGCAAGCACTTTGGTATGGTGATGGAGGATGGGAGAAGGGTCTTAGCGATTGGAAAGCATGAACTGATGGTTGGAGATACTCGACTTTCTGTTTCCTTGACAACAAGCTTCTTGGGTAGAAAATGACATTATTTTGTTCAGCCTTTGCTCACTGTTGTTTCAAAAAATGTTGGCATTTCAAAAACATTTTTACTGTTTATCCAAGTGTAATTGATTCATTCTCTATTTTTAGTATTTTATCCTAACAGCACCCAGGCAATTTGTTCCTTAAACAGGTTTAAGGAGTGGATCTTTATCTGATACTAGGAAGTATTTATAGTATTATACTAAGGATGTAATTCTGAAAACTGACCATATTAATTAGTGAAATGAGTAAAAGTTTTAGG

Ace file of the UniGene sp_v3.0_unigene24448 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative beta-D-xylosidase 6 [Arabidopsis thaliana] sp\|Q9LXA8.1\|BXL6_ARATH RecName: Full=Probable beta-D-xylosidase 6; Short=AtBXL6; Flags: Precursor emb\|CAB89387.1\| beta-xylosidase-like protein [Arabidopsis thaliana] gb\|AAL09717.1\| AT5g10560/F12B17_90 [A	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Beta-glucosidase, putative	-	-	4.317e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	2.162e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		2.162e-21	%
Sma3	Starch and sucrose metabolism	00500		2.162e-21	%
Sma3	Phenylpropanoid biosynthesis	00940		2.162e-21	%
Sma3	Biosynthesis of secondary metabolites	01110		2.162e-21	%
Sma3	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	9.854e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Starch and sucrose metabolism	00500	9.854e-15	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	9.854e-15	%
Sma3	Metabolic pathways	01100	9.854e-15	%

Source	Gene names
Sma3	ARF; At1g02640; At1g78060; At5g09700; At5g09730; At5g10560; At5g10560/F12B17_90; At5g49360; At5g64570; B0414F07.1; B1011H02.4; BXL2; BXL3; BXL4; BXL7; F12B17_90; F17I14_110; F17I14_80; GSVIVT00001462001; GSVIVT00003420001; GSVIVT00008402001; GSVIVT0000853

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10560.1	Glycosyl hydrolase family protein chr5:3336335-3339351 REVERSE LENGTH=792	56%
RefSeq	Arabidopsis thaliana	NP_196618.1	putative beta-D-xylosidase 6 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002299457.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 802 - 304

Fln protein: MRLLTVMSRQIQALCISIVLSLSIVIVISDSIDYACKEHDVNSVSYGFCNTSLPIKERVEDLIRRMTLEEKVGQLSNGASDVQRLGIPRYEWWSESLHGIASNGPGVNFDGPIPAATIFPQIILSAASFNSTLWFRTAQAIAVEARAMYNVGQAGLTFWAPNINIFRDPRWGRGQETGGEDPLLTSEFAVAFVRGFQGENDSHDTMEKSQRSRARRELKMEGLNSLQREPSRLMLSACCKHFTAYDLDSWQGYARYTFNAVVSEQDLKDTFQPPFQRCVQDGHASCMMCSYNQLNGVPVCANYDLLTQMTRNDWGLEGYITSDCDAVAIISAFQHYATCAEDAVTDVLKAGMDINCGTYLLRNTMSAIKQGKLHESVIDQSLFNLFSIRMRLGLFDGDPKQQEYGHLRPDHVCTNEHWQLALEGSRQGIVLLKNIGNALPVSKNKINSIAVIGPNANATEEMLGDYIGIPCNPVTPFVALQNYIGNVSFSKGCENVACSSNAKFGEAVDIAAKADAVVIVVGLDLTQETEDHDRVNLTLPGQQQRLVSEVAVASKGPVVLVLMCGGPVDVSFAKDDPRISSILWVGYPGEAGGQALAEIIFGDYNPGGRLPMTWYPQEFINVPMTDMNMRPNSSTGYPGRTYRFYTGKTVFQFGEGLSYSNYSYKFSSKDGHIILPFSSPSYGEWASDYIDIDDIPCESFKFTTKLTVQNHGSMDGSHVVLLFSRYGGNFRGAPHKQLIDFKRVHIVAGKTTDVSFLVNPCKHFGMVMEDGRRVLAIGKHELMVGDTRLSVSLTTSFLGRK*

Protein Length: 803

Fln nts: CACTCCATAATCTAAGATTGGAAAAGTAGGTGTTTCGAATTGAAATGAACTTTAGGTGAGGCATCTTCTCTCGAGAGAAAAGGGGGAAATCGGGATTTCTGG_-_ATGAGATTACTTACAGTCATGTCAAGACAGATACAAGCGCTGTGCATATCTATAGTACTCAGTCTGAGCATTGTGATTGTGATTTCTGATTCAATTGATTACGCTTGCAAGGAACATGATGTAAATAGTGTATCATACGGATTCTGCAACACATCGCTGCCTATAAAGGAGCGCGTTGAAGATCTGATAAGGCGTATGACTCTAGAAGAAAAGGTTGGACAGCTGTCGAATGGAGCATCCGATGTGCAGAGGCTGGGAATACCCAGATACGAATGGTGGTCAGAATCATTGCACGGTATTGCAAGTAATGGACCAGGCGTCAATTTCGATGGTCCCATACCCGCAGCAACTATTTTCCCCCAAATCATCCTCTCCGCAGCTTCCTTCAATTCCACTTTGTGGTTTCGCACAGCACAGGCAATAGCAGTTGAAGCTCGAGCAATGTACAATGTTGGACAAGCAGGCTTGACATTCTGGGCACCCAATATAAATATCTTTCGAGACCCTCGCTGGGGAAGAGGTCAGGAAACTGGGGGGGAAGACCCATTATTGACTAGTGAGTTTGCAGTTGCATTTGTAAGGGGTTTTCAAGGCGAAAATGACAGTCATGACACAATGGAGAAGAGTCAGAGAAGCAGAGCTAGGAGGGAGTTAAAAATGGAGGGGCTAAATAGCCTCCAAAGAGAACCGAGTCGCTTAATGCTTTCAGCATGTTGCAAACATTTCACAGCATATGATTTGGATAGTTGGCAAGGTTACGCTCGCTACACCTTCAATGCTGTGGTGTCTGAACAAGACCTGAAAGATACATTCCAACCACCTTTCCAGAGATGTGTGCAAGATGGTCATGCTAGTTGTATGATGTGCTCATACAATCAGCTAAATGGAGTCCCTGTATGTGCAAACTATGACCTTCTCACACAAATGACAAGAAATGACTGGGGCCTTGAAGGGTATATTACTTCAGACTGTGATGCAGTAGCAATCATTTCTGCATTTCAGCACTATGCTACATGTGCAGAAGATGCAGTCACAGATGTTCTGAAAGCAGGGATGGATATCAACTGTGGTACTTATTTGCTTCGAAACACAATGTCAGCAATTAAACAAGGAAAGCTCCATGAATCAGTGATTGATCAATCCCTTTTCAATTTATTCTCAATTCGGATGCGCCTTGGGCTTTTTGATGGTGATCCTAAACAACAGGAATATGGTCATCTTCGACCAGACCATGTCTGTACTAATGAACACTGGCAACTAGCATTAGAAGGCTCCAGACAGGGAATTGTGCTTCTCAAGAACATTGGCAATGCTTTACCAGTGTCGAAAAATAAAATCAACTCTATAGCTGTTATAGGACCTAATGCAAATGCTACGGAAGAAATGCTTGGCGATTATATAGGCATCCCTTGTAATCCTGTTACTCCATTTGTAGCCCTTCAGAATTACATTGGCAATGTATCATTCTCCAAAGGGTGTGAAAATGTGGCCTGCTCTTCCAATGCCAAATTCGGTGAAGCAGTAGATATTGCAGCTAAAGCAGATGCTGTGGTTATTGTTGTGGGGTTGGATCTCACACAGGAAACGGAAGATCATGACAGAGTAAATTTAACCCTCCCAGGGCAACAACAGAGACTAGTATCTGAAGTTGCTGTTGCTTCAAAGGGACCTGTGGTACTTGTTCTCATGTGTGGGGGTCCAGTGGATGTCTCATTTGCAAAGGATGATCCTCGAATTTCAAGTATATTGTGGGTGGGCTATCCTGGTGAAGCTGGAGGCCAAGCACTAGCTGAAATTATTTTTGGAGATTACAATCCAGGTGGCAGGCTACCTATGACATGGTATCCTCAAGAATTTATCAATGTACCTATGACAGACATGAATATGCGACCTAATTCTTCAACAGGCTATCCAGGCCGAACCTACCGGTTTTACACTGGAAAAACAGTCTTCCAATTTGGCGAAGGTTTGAGTTATTCAAACTACTCATACAAATTTTCCTCGAAGGATGGGCATATTATTCTGCCATTTTCTTCACCATCGTACGGAGAGTGGGCATCTGACTACATTGATATAGATGATATACCATGTGAAAGTTTTAAATTTACCACTAAACTTACTGTACAAAACCATGGTAGCATGGATGGGAGTCATGTTGTACTGTTATTTTCAAGATATGGTGGAAATTTCAGAGGAGCTCCACACAAGCAACTAATTGACTTTAAACGTGTCCATATCGTTGCTGGTAAAACCACTGATGTGAGCTTTCTTGTTAATCCTTGCAAGCACTTTGGTATGGTGATGGAGGATGGGAGAAGGGTCTTAGCGATTGGAAAGCATGAACTGATGGTTGGAGATACTCGACTTTCTGTTTCCTTGACAACAAGCTTCTTGGGTAGAAAATGA___CATTATTTTGTTCAGCCTTTGCTCACTGTTGTTTCAAAAAATGTTGGCATTTCAAAAACATTTTTACTGTTTATCCAAGTGTAATTGATTCATTCTCTATTTTTAGTATTTTATCCTAACAGCACCCAGGCAATTTGTTCCTTAAACAGGTTTAAGGAGTGGATCTTTATCTGATACTAGGAAGTATTTATAGTATTATACTAAGGATGTAATTCTGAAAACTGACCATATTAATTAGTGAAATGAGTAAAAGTTTTAGG

Fln Alignment:

Contig24448___FGEXXXXXXXXXXXXXXVGLDLTQETEDHDRVNLTLPGQQQRLVSEVAVASKGPVVLVLMCGGPVDVSFAKDDPRISSILWVGYPGEAGGQALAEIIFGDYNPGGRLPMTWYPQEFINVPMTDMNMRPNSSTGYPGRTYRFYTGKTVFQFGEGL-----XXXXXXXXXXXKDGHIILPFSSPSYGEWASDYIDIDDIPCESFKFTTKLTVQNHGSMDGSHVVLLFSRYGGNFRGAPHKQLIDFKRVHIVAGKTTDVSFLVNPCKHFGMVMEDGRRVLAIGKHELMVGDTRLSVSLTTSFLGR
D5ABI5_______________FGEAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDFVKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFE-ALGNRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSLVTKHLNR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
415			80	20	0.995493
628			66	33	0.997452
712	10			90	0.90298
718	90	10			0.90298
720	10			90	0.90298
721	10		90		0.90298
723			10	90	0.90298
725		10		90	0.90298
726	10			90	0.90298
728		88	11		0.923564
829	14		85		0.993533
1103	25	75			0.996473
1106		75		25	0.996473
1107	75			25	0.996473
1850	12		87		0.992554
1869			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain