SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24436

Length: 1394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene24436 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] dbj\|BAB02158.1\| 3-hydroxybutyryl-CoA dehydrogenase-like protein [Arabidopsis thaliana] gb\|AAN17431.1\| putative 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gb\|AAN65095.1\| putative 3-hy	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Sma3	3-hydroxybutyryl-CoA dehydrogenase.	EC:1.1.1.157	-	2.796e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Benzoate degradation	00362		2.796e-09	%
Sma3	Butanoate metabolism	00650		2.796e-09	%
Sma3	Metabolic pathways	01100		2.796e-09	%
Sma3	3-hydroxyacyl-CoA dehydrogenase.	EC:1.1.1.35	-	1.006e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid elongation in mitochondria	00062	1.006e-07	%
Sma3	Fatty acid metabolism	00071	1.006e-07	%
Sma3	Primary bile acid biosynthesis	00120	1.006e-07	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.006e-07	%
Sma3	Geraniol degradation	00281	1.006e-07	%
Sma3	Lysine degradation	00310	1.006e-07	%
Sma3	Tryptophan metabolism	00380	1.006e-07	%
Sma3	Toluene degradation	00623	1.006e-07	%
Sma3	Butanoate metabolism	00650	1.006e-07	%
Sma3	Carbon fixation pathways in prokaryotes	00720	1.006e-07	%
Sma3	Biosynthesis of plant hormones	01070	1.006e-07	%
Sma3	Metabolic pathways	01100	1.006e-07	%
Sma3	Biosynthesis of secondary metabolites	01110	1.006e-07	%

Source	Gene names
Sma3	At3g15290; CHLREDRAFT_79407; GSVIVT00027718001; HAD2; Os01g0796400; OsI_04066; OsJ_03749; P0699H05.27-1; PHATRDRAFT_39681; PHYPADRAFT_114928; POPTRDRAFT_742962; RCOM_0589820; THAPSDRAFT_11182; VITISV_020497;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15290.1	3-hydroxyacyl-CoA dehydrogenase family protein chr3:5145054-5146613 FORWARD LENGTH=294	67%
RefSeq	Arabidopsis thaliana	NP_188147.1	3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002329079.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7S5

Fln msg:

Fln protein: MADIKVIGVLGSGQMGSGIAQLAAVAGISVVLVDSSDSALQKGMEGIRSSLQRFVKKGELSQEAADDALAKVKHTTSLKEMSSADVIIEAIVENEDVKKNVFSELDRIIKPHTILASNTSSISINRLASATRRPHQVIGMHFMNPPPVMKLVEIVRGSATADGVFATIKALAERFSKTVICSQDYPGFIVNRILMPMINEAFYTLYTGVATKEDIDCGMKLGTSHPMGPLELADFIGLDVCLSIMKILHHGLGESKYSPCPLLVQYVDAGYLGRKSGKGVYSYRASPSNGNPRSRI*

Protein Length: 298

Fln nts: ACATGGGGTCTCCCGTGGATTATAAAATGCCAGCTCGTGAGATGCAGATGAGGGATTGTGCAGAGGGACACCCACCATTCTAATTGTGCAGAGGGACACCCACCATTCTAATTATTGCAATTCCGAAGGAAAGGTCCTGAAGGTCTGTTGTGCATACAATCACG_-_ATGGCCGATATCAAGGTGATCGGAGTGCTGGGAAGTGGTCAAATGGGGTCGGGGATAGCTCAGCTGGCAGCAGTTGCAGGAATATCAGTGGTGCTTGTCGATTCAAGCGACAGCGCCCTGCAAAAGGGAATGGAGGGAATTCGCTCCTCACTGCAGCGCTTTGTTAAGAAAGGAGAGCTTTCTCAGGAAGCAGCAGATGATGCACTGGCAAAAGTAAAGCACACAACATCGCTAAAAGAAATGAGCTCTGCAGATGTCATAATTGAGGCCATTGTGGAGAATGAAGATGTAAAGAAGAATGTTTTTTCTGAGTTGGATCGTATTATAAAGCCACACACAATATTAGCATCTAATACTAGTTCTATCTCTATCAACCGTCTAGCTTCTGCAACCCGACGCCCTCATCAGGTGATTGGTATGCATTTCATGAACCCCCCACCTGTCATGAAGCTAGTTGAAATTGTTCGAGGATCAGCAACAGCAGATGGAGTCTTTGCAACTATCAAAGCCTTAGCTGAAAGGTTTAGCAAAACTGTCATATGTTCACAAGACTATCCTGGATTCATTGTAAATCGTATTCTCATGCCAATGATCAATGAGGCATTTTACACACTTTATACGGGTGTGGCAACAAAAGAAGACATTGATTGTGGGATGAAGCTGGGTACAAGCCACCCGATGGGACCCCTAGAACTTGCAGACTTCATTGGATTAGATGTTTGCCTCTCAATTATGAAGATTCTCCATCACGGGCTTGGAGAAAGCAAATATTCCCCATGCCCACTGCTTGTGCAGTATGTTGATGCAGGGTACCTTGGTCGGAAGAGTGGGAAGGGCGTCTACTCCTACCGTGCATCACCAAGTAATGGTAATCCAAGGTCTCGCATATGA___AATCCTCAGGAGAATTAAGTCTAGATAGTCCAAAGAAAATCAGTGTTACTAACTAAAAGGGACTTATTTGACGAGCATGGAATTAGTCCCCATGAATAATCCATTCCAAGCAAGGTTGTTGATGCAGTAGTATATGAACCTCATTAGTTAAAAGCCAAATCATTTATTTATGGTAACCTCTGTGCATCTTTTGTATATATTGGGAAGGAGTAAATAGTGGGGAGGATCTTCAGTTTATTTAAGTCTGGCATTTCTGAAAGGCAAAGCTGTCAGGCTAACTGCTTTCCCTTGTCATTTACTTTTGATCTTCAATTCATATCATTAAGATTTACCAATACC

Fln Alignment:

Contig24436___MADIKVIGVLGSGQMGSGIAQLAAVAGIXXXXXXXXXSALQKGMEGIRSSLQRFVKKGELSQEAADDALAKVKHTTSLKEMSSADVIIEAIVENEDVKKNVFSELDRIIKPHTILASNTSSISINRLASATRRPHQVIGMHFMNPPPVMKLVEIVRGSATADGVFATIKALAERFSKTVICSQDYPGFIVNRILMPMINEAFYTLYTGVATKEDIDCGMKLGTSHPMGPLELADFIGLDVCLSIMKILHHGLGESKYSPCPLLVQYVDAGYLGRKSGKGVYSYRASPSNGNPRSRI
D5A7S5_______________MADIKVIGVLGSGQMGLGIAQLAAVAGISVVLVDSSDSALQKGMQGIRSSLQRFVKKGELTQEAANDTLAKVKHTTSLKEMSSADVIIEAIVENEDVKKHLFSELDRIVKPHTILASNTSSISINRLASATRRPHQVIGMHFMNPPPIMKLVEIVRGSATADGVFATIKALAERFGKTVIRSQDYPGFIVNRILMPMINEVFYTLYTGVATKEDIDCGMKLGTSHPMGPLELADFIGLDVCLSIMKILHHGLGESKYSPCPLLVQYVDAGYLGRKSGKGVYSYHAPPNNGNPRSRI

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
40	25		25		1.0
743	11	88			0.923564
768	12	75		12	0.975346
789		83		16	0.994512
974	75		25		1.0
1144		11		88	0.923564
1182	87		12		0.992554
1282	87	12			0.992554
1283	87	12			0.992554
1284		12		87	0.992554
1285		12		87	0.992554
1287			87	12	0.992554
1292		28	57		1.0
1293			14	85	0.993533
1294			57	42	1.0
1295		42	57		1.0
1296		14	85		0.993533
1297		14		42	1.0
1298		14	85		0.993533
1301	28	71			1.0
1302	42	57			1.0
1310		66		33	1.0
1315		33		66	0.997452
1316	66	33			0.997452
1317		33	66		0.997452
1318	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain