SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24426

Length: 2343 nt

UniGene Fasta

>sp_v3.0_unigene24426
TTCATGAACCCTGTACCGCCGGTGAAATACTAGAGGGCCGTCTCTTCATGGGCGGAGGTGTGAACGCGGTGGACGAAGAACGCGGAGGCCACGATCGGCGCCGTCAAAATTGACGGCCGGCACACAACATGTGCATGGTTTAACAAACGGGAAGCGGCTCACAACTTCGTGGTCCGCCCGCCTCAGCAGAGCGCGGTAGATTGAGGGAGGAAGGGGACAGAATAATAAGGAAGAAGAGAGGTGCTCTGTCTGCCTGCGGACCCTGCATTACAGGGCCAGCCTAGACAGAGCATCATCTACTCAGATTCGCCTCGAATCAAATCAAACAGCTAGGACTACTGTGCTAAAAGTCTGACTTTGGCGGCAATTGTATGAAGACTGCCTTTTGACAGCAGAATGGTTTTGGGAGAGAGACAGGGGCAAACCGACAAGAAAACGGGCTTAGGCTTAGGCTTAGGCTCGTTGGCAGGGGAAAGTTTGGAGTGGCCTTCTGAAGAAAACGAAAAAAAAATGCGGGGCAGATCTTCCGGGGGTTCGTTTTCCCCCAAATTGATTGTGCTCCTCTGCGTTGCGAGTTTCTGCATCGGTATGCTCTTTACTAACAGAATGTGGAGCAATCCTGAGACGTACGATGACGTTGATCCCACGCACAAACGGGAATTGCAAGTTCTTTCTCAAGATTGTGAAGACAAGCAAAAAGTCGAAAATGGCGAAAGCAGAGATATAATGGGGGAAGTTGCCAAGACACATCAAGCCATTCAATCGTTGGACAAAACAATTTCTTCTCTTGAAATGGAATTAGCAGTTGCTCGGACTGCAAAATCAGCCAACCTCAATGGGTCACCTGTTCTTGAGAAGCCTGATGGACAAGGCCCTGAGGTACGCCAGAAGGCATTTGTTGTGATTGGAATCAATACAGCTTTTAGCAGTAGAAAGCGGCGAGACTCTGTTCGAGAAACCTGGATGCCACAAGGATCCAAACTGAAGCAGTTGGAGGAGAAGAAAGGCATTGTTATTAGATTCGTTATTGGACACAGTGTTACACCTGGTGGTATTTTGGATCGTGCCATTGATTCAGAAGATGCACAGCATCATGATTTCCTTAGATTGGAACATGTTGAAGGCTACCACGAGCTCTCAGCAAAGACCAAGACCTATTTTTCTACAGCAGTAGCAAAATGGGATGCAGATTTCTATGTTAAGGTCGATGATGATGTGCATGTTAATTTAGGGATGCTGGCCACCACTCTTGCACGATACCGATCTAAACCAAGAATTTACATTGGTTGCATGAAGTCTGGACCTGTTCTTGCACAGAAAGGTGTCAAGTATCATGAGCCAGAATATTGGAAGTTTGGTGAAGAGGGTAATAGATACTTCAGACATGCTACTGGTCAGATTTATGCTATTTCAAAAGATTTGGCTACGTACATATCTATAAATTCGCAAATATTACATAGGTATGCCAATGAAGATGTTTCATTGGGGTCCTGGTTCATTGGGCTAGATGTTGAACACATAGATGAACGCAGCATGTGCTGTGGTACTCCTCCAGATTGTGAATGGAAGGCACAAGCCGGCAATGTTTGTGTTGCATCATTTGATTGGACTTGCAGTGGAATCTGTAAATCTGTTGAAAGGTTAAAAGAGGTGCATCGTACCTGCAGTGAAGGAGATGGCGCAGTGTGGAACACATTAATTTGATTCCTCTGCATATATTATTTATGGCATGCTTCTCCCTTAAAGAAACTTTGCAATGAGATTGACACGTATATAAAGAGCCATCAAGTCAACATAGTTTTTTGATAACTTTCAAAATGGTGTTCTTAACAGGAATAGGTAATGGTTAGTGGTGAAAATAGAGATAGGATTAGAAATTATGTGGAAGAAGAATGAAAGAATAATTCTTATTTTGGAGGTTTTGATTCTTGGCAAATCTCCATGTAAACGACCAAATTTCTGGGTAGTCACTCAGAATCCAGATTTGTCAGTGAGGCCTGGTTATGGTTGCTTTAATTTATTGTTAATACGATGCACAGCTCAGTTGAGTTGCAGTTGTTGAGGGCTTTGCCAATAATACAGATTGCACAGGCAAATTGAAGCAGATTTTTGCAGTCCTTTCTCTCTCATTTTTAACTGAAGAGTTCACAGGTTTGTTACTCTAATGAAATAGTCAGTTTACAAAGACTGGCCTCCATAGTTACGACTGTAATGCCCCAATTTTATTCAAATTGCTAACAACTAGTTGGGAAGGTAATAAGAAAATGCTGCAGTTACATAGATCTCTGTGGGATGTATATGAACATTTTCGTACATATGCATTATTAATGGGACAGAAAAACA

Ace file of the UniGene sp_v3.0_unigene24426

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01762, Galactosyl_T, Galactosyltransferase	-	-	0.0	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Beta-1,3-galactosyltransferase sqv-2, putative	-	-	6.703e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	2.411e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		2.411e-17	%
Sma3	N-Glycan biosynthesis	00510		2.411e-17	%
Sma3	Mucin type O-Glycan biosynthesis	00512		2.411e-17	%
Sma3	Various types of N-glycan biosynthesis	00513		2.411e-17	%
Sma3	Other types of O-glycan biosynthesis	00514		2.411e-17	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		2.411e-17	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		2.411e-17	%
Sma3	Lipopolysaccharide biosynthesis	00540		2.411e-17	%
Sma3	Peptidoglycan biosynthesis	00550		2.411e-17	%
Sma3	Glycerolipid metabolism	00561		2.411e-17	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		2.411e-17	%
Sma3	Sphingolipid metabolism	00600		2.411e-17	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		2.411e-17	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		2.411e-17	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		2.411e-17	%
Sma3	Carotenoid biosynthesis	00906		2.411e-17	%
Sma3	Zeatin biosynthesis	00908		2.411e-17	%
Sma3	Flavonoid biosynthesis	00941		2.411e-17	%
Sma3	Anthocyanin biosynthesis	00942		2.411e-17	%
Sma3	Flavone and flavonol biosynthesis	00944		2.411e-17	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		2.411e-17	%
Sma3	Betalain biosynthesis	00965		2.411e-17	%
Sma3	Biosynthesis of type II polyketide products	01057		2.411e-17	%
Sma3	Metabolic pathways	01100		2.411e-17	%
Sma3	Biosynthesis of secondary metabolites	01110		2.411e-17	%
Sma3	Galactosylxylosylprotein 3-beta-galactosyltransferase.	EC:2.4.1.134	-	1.528e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	1.528e-27	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	1.528e-27	%
Sma3	Metabolic pathways	01100	1.528e-27	%

Source	Gene names
Sma3	AT4g32110; At1g05170; At1g11730; At1g22015; At1g32930; At1g33430; At1g77810; At2g32430; At4g26940; At5g53340; B3GALT1; B3GALT11; B3GALT2; B3GALT3; B3GALT4; B3GALT5; B3GALT6; B3GALT7; B3GALT8; F10C21.10; F10M23.280; F10N7.80; F25C20.12; F28K19.2; F2E2.6; F

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	galactosyltransferase activity	GO:0008378	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	beta-1,3-galactosyltransferase activity	GO:0048531	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05170.2	-	65%
RefSeq	Arabidopsis thaliana	NP_172009.1	putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002320464.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE09

Fln msg: your sequence is longer than subject: 436 - 335

Fln protein: MVLGERQGQTDKKTGLGLGLGSLAGESLEWPSEENEKKMRGRSSGGSFSPKLIVLLCVASFCIGMLFTNRMWSNPETYDDVDPTHKRELQVLSQDCEDKQKVENGESRDIMGEVAKTHQAIQSLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGQGPEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGSKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDSEDAQHHDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNRYFRHATGQIYAISKDLATYISINSQILHRYANEDVSLGSWFIGLDVEHIDERSMCCGTPPDCEWKAQAGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWNTLI*

Protein Length: 437

Fln nts: TTCATGAACCCTGTACCGCCGGTGAAATACTAGAGGGCCGTCTCTTCATGGGCGGAGGTGTGAACGCGGTGGACGAAGAACGCGGAGGCCACGATCGGCGCCGTCAAAATTGACGGCCGGCACACAACATGTGCATGGTTTAACAAACGGGAAGCGGCTCACAACTTCGTGGTCCGCCCGCCTCAGCAGAGCGCGGTAGATTGAGGGAGGAAGGGGACAGAATAATAAGGAAGAAGAGAGGTGCTCTGTCTGCCTGCGGACCCTGCATTACAGGGCCAGCCTAGACAGAGCATCATCTACTCAGATTCGCCTCGAATCAAATCAAACAGCTAGGACTACTGTGCTAAAAGTCTGACTTTGGCGGCAATTGTATGAAGACTGCCTTTTGACAGCAGA_-_ATGGTTTTGGGAGAGAGACAGGGGCAAACCGACAAGAAAACGGGCTTAGGCTTAGGCTTAGGCTCGTTGGCAGGGGAAAGTTTGGAGTGGCCTTCTGAAGAAAACGAAAAAAAAATGCGGGGCAGATCTTCCGGGGGTTCGTTTTCCCCCAAATTGATTGTGCTCCTCTGCGTTGCGAGTTTCTGCATCGGTATGCTCTTTACTAACAGAATGTGGAGCAATCCTGAGACGTACGATGACGTTGATCCCACGCACAAACGGGAATTGCAAGTTCTTTCTCAAGATTGTGAAGACAAGCAAAAAGTCGAAAATGGCGAAAGCAGAGATATAATGGGGGAAGTTGCCAAGACACATCAAGCCATTCAATCGTTGGACAAAACAATTTCTTCTCTTGAAATGGAATTAGCAGTTGCTCGGACTGCAAAATCAGCCAACCTCAATGGGTCACCTGTTCTTGAGAAGCCTGATGGACAAGGCCCTGAGGTACGCCAGAAGGCATTTGTTGTGATTGGAATCAATACAGCTTTTAGCAGTAGAAAGCGGCGAGACTCTGTTCGAGAAACCTGGATGCCACAAGGATCCAAACTGAAGCAGTTGGAGGAGAAGAAAGGCATTGTTATTAGATTCGTTATTGGACACAGTGTTACACCTGGTGGTATTTTGGATCGTGCCATTGATTCAGAAGATGCACAGCATCATGATTTCCTTAGATTGGAACATGTTGAAGGCTACCACGAGCTCTCAGCAAAGACCAAGACCTATTTTTCTACAGCAGTAGCAAAATGGGATGCAGATTTCTATGTTAAGGTCGATGATGATGTGCATGTTAATTTAGGGATGCTGGCCACCACTCTTGCACGATACCGATCTAAACCAAGAATTTACATTGGTTGCATGAAGTCTGGACCTGTTCTTGCACAGAAAGGTGTCAAGTATCATGAGCCAGAATATTGGAAGTTTGGTGAAGAGGGTAATAGATACTTCAGACATGCTACTGGTCAGATTTATGCTATTTCAAAAGATTTGGCTACGTACATATCTATAAATTCGCAAATATTACATAGGTATGCCAATGAAGATGTTTCATTGGGGTCCTGGTTCATTGGGCTAGATGTTGAACACATAGATGAACGCAGCATGTGCTGTGGTACTCCTCCAGATTGTGAATGGAAGGCACAAGCCGGCAATGTTTGTGTTGCATCATTTGATTGGACTTGCAGTGGAATCTGTAAATCTGTTGAAAGGTTAAAAGAGGTGCATCGTACCTGCAGTGAAGGAGATGGCGCAGTGTGGAACACATTAATTTGA___TTCCTCTGCATATATTATTTATGGCATGCTTCTCCCTTAAAGAAACTTTGCAATGAGATTGACACGTATATAAAGAGCCATCAAGTCAACATAGTTTTTTGATAACTTTCAAAATGGTGTTCTTAACAGGAATAGGTAATGGTTAGTGGTGAAAATAGAGATAGGATTAGAAATTATGTGGAAGAAGAATGAAAGAATAATTCTTATTTTGGAGGTTTTGATTCTTGGCAAATCTCCATGTAAACGACCAAATTTCTGGGTAGTCACTCAGAATCCAGATTTGTCAGTGAGGCCTGGTTATGGTTGCTTTAATTTATTGTTAATACGATGCACAGCTCAGTTGAGTTGCAGTTGTTGAGGGCTTTGCCAATAATACAGATTGCACAGGCAAATTGAAGCAGATTTTTGCAGTCCTTTCTCTCTCATTTTTAACTGAAGAGTTCACAGGTTTGTTACTCTAATGAAATAGTCAGTTTACAAAGACTGGCCTCCATAGTTACGACTGTAATGCCCCAATTTTATTCAAATTGCTAACAACTAGTTGGGAAGGTAATAAGAAAATGCTGCAGTTACATAGATCTCTGTGGGATGTATATGAACATTTTCGTACATATGCATTATTAATGGGACAGAAAAACA

Fln Alignment:

Contig24426___SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGQGPEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGSKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDSEDAQHHDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNRYFRHATGQIYAISKDLATYISINSQILHRYANEDVSLGSWFIGLDVEHIDERSMCCGTPPDCEWKAQAGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWNTLI
D5AE09_______________SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGRGSEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGPKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDAEDAQHNDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNRYFRHATGQIYAISRDLATYISINSPILHRYANEDVSLGAWFIGLDVEHIDERSMCCGTPPDCEWKAQAGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWSTLI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
253		80	20		1.0
254		80	20		1.0
255			20	80	1.0
295	94		5		0.998578
337			4	95	0.995055
753	83		16		0.994512
942	80		20		0.995493
989	50		50		1.0
996	66		33		1.0
1289	11		88		0.923564
1293			88	11	0.923564
2007		18	81		0.999994
2089		20	79		1.0
2105			87	12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
439	460	GGCTTA GGCTTA GGCTTA GGCT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain