SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24418

Length: 1057 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24418

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana] gb\|AAC67358.1\| putative acid phosphatase [Arabidopsis thaliana] gb\|AEC09554.1\| HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Putative acid phosphatase	-	-	7.415e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	2.203e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		2.203e-15	%
Sma3	Riboflavin metabolism	00740		2.203e-15	%

Source	Gene names
Sma3	57h21.11; ACP; APS-1; APS-1(1); APS-AA2; APS1; AT4g25150; At2g38600; At4g25150; At4g29260; At4g29270; At5g44020; At5g44020/MRH10.13; At5g51260; B1007D10.10; B15-3-5; EEF13; F13M23.290; GSVIVT00016639001; GSVIVT00025255001; GSVIVT00028521001; GSVIVT0003085

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38600.1	HAD superfamily, subfamily IIIB acid phosphatase chr2:16145907-16146857 FORWARD LENGTH=251	52%
RefSeq	Arabidopsis thaliana	NP_181394.1	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002323092.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA42

Fln msg:

Fln protein: MMRRTVIPWRFLALPFIYINIWWKFEAFAQLYDAANESNADCLSWRLNVELNNLRNWWTVPQHCLTYVQEYMLSGQYERDLAMASDHIVSYTEQISPVGDGMDAWVMDVDDTALSNLEYYMGRNFGGMPFDPVSFNNWAIKGKSVALPAILGLYKHLKTSGYQIFFLTGRDESQRNITEENLLLQGYTDYAGLILRERKAKGKSAVVFKSEKREELIKNGYRIWGNVGDQWSDIVGTAVGARTFKLPNPMYFVP*

Protein Length: 256

Fln nts: GGAGTGTAATTGATTGCCTCCTCCTTCGGATCTGGCATTCGCTACAAAAGACAGTTATTCAGATAGAGCGATTATAAGTAAGAATCGTAGCTTCAAATAACTCTGAATTCTCGCAATATC_-_ATGATGAGGCGCACTGTTATACCATGGAGATTTCTGGCGTTACCGTTTATTTATATCAACATTTGGTGGAAATTTGAGGCCTTTGCCCAACTATATGATGCCGCAAATGAGAGCAATGCAGATTGTTTGAGCTGGAGGCTGAATGTAGAATTGAATAATTTGAGGAATTGGTGGACAGTTCCCCAACATTGCTTGACATACGTTCAGGAGTACATGTTGTCTGGGCAGTACGAAAGAGATCTGGCAATGGCGAGCGACCACATTGTTTCTTACACAGAACAAATCAGTCCAGTTGGCGATGGTATGGATGCGTGGGTGATGGATGTGGATGACACTGCCTTATCCAATCTCGAATATTACATGGGACGAAATTTTGGTGGAATGCCCTTCGATCCGGTTTCCTTTAACAATTGGGCCATAAAGGGTAAATCCGTTGCTCTGCCTGCTATTCTGGGATTGTATAAGCATCTCAAGACTTCTGGATACCAGATTTTCTTTCTCACAGGAAGGGATGAATCTCAACGTAACATTACAGAAGAGAATCTCCTCCTGCAGGGGTATACTGACTATGCTGGACTTATTTTAAGGGAGCGCAAAGCAAAAGGGAAAAGCGCAGTAGTTTTCAAGTCAGAAAAGAGGGAGGAATTGATAAAGAATGGGTATCGTATATGGGGCAATGTTGGAGATCAGTGGAGCGATATTGTTGGAACCGCTGTGGGTGCTCGTACATTCAAGCTTCCTAATCCTATGTACTTCGTTCCTTGA___CAGCTCCAAGTTAGCTATAGGCCTTGGTAGCTCCAAGTTAGTTATAGGCTCTGCCTGTAAGAAGTAAAGAACAAGAATAATTTCAATTGAGTTTATTTGGGGAAGTTACAAAAATTATTCTTACCTTGAAATTTTAGGAGGAATGATCCATATATCTCAATATAATTGTTCG

Fln Alignment:

Contig24418___ANESNADCLSWRLNVELNNLRNWWTVPQHCLTYVQEYMLS-GQYERDLAMASDHIVSYTEQISPVGDGMDAWVMDVDDTALSNLEYYMGRNFGGMPFDPVSFNNWAIKGKSVALPAILGLYKHLKTSGYQIFFLTGRDESQRNITEENLLLQGYTDYAGLILRERKAKGKSAVVFKSEKREELIKNGYRIWGNVGDQWSDIVGTAVGARTFKLPNPMYFV
D5AA42_______________SGRSASRCEGWRLSVESGNLRDWDVVPSKCVGYVQKYMMTAGQYWEDSKVAVFTILEYVKTLKLVGDGKDAWVFDIDETLLSNIPYYQQHEYGGKAFDSKTFEAWVLEMKSPALPSSLLLYNRLLARGFKIFLLTGRDESQRNGTVHNLFQAGYKGWAGLILRGVNEQGSQASAYKPEKRAELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
826		41		58	1.0
832		66	33		1.0
841		33		66	1.0
850	73			26	1.0
890	26	73			1.0
901	40	60			1.0
959	76	23			1.0
971	63		36		1.0
972	72	9		18	0.999994
988	16		83		0.994512
994	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain