SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24410

Length: 1043 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24410

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aquaporin-like protein n=1 Tax=Picea abies RepID=O65860_PICAB	-	-	0.0	70%
FL-Next	tr=Aquaporin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	57%
Sma3	Aquaporin, MIP family, TIP subfamily	-	-	3.89561e-42	-

Source	Gene names
Sma3	25.t00032; 26.t00032; 31.t00034; AQP; AQP.1; AQP1; AQP5; AQP6; AT3G16240; Aqp1; At1g17810; At1g73190; At2g25810; At2g36830; At3g16240; At3g26520; At3g47440; At4g01470; At4g17340; At5g47450; C1275ERIPDM; CT179; DIP; F11O4.1; F17H15.16; F2H15.4; FCAALL.412;

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	-
Sma3	urea transmembrane transporter activity	GO:0015204	Molecular Function	-
Sma3	water channel activity	GO:0015250	Molecular Function	-
Sma3	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	urea transport	GO:0015840	Biological Process	-
Sma3	water homeostasis	GO:0030104	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Archaeal flagellin, N-terminal	IPR013373	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17340.1	" TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 chr4:9699318-9700250 FORWARD LENGTH=250"	74%
RefSeq	Arabidopsis thaliana	NP_193465.1	putative aquaporin TIP2-2 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002326457.1	aquaporin, MIP family, TIP subfamily [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65860

Fln msg: Overlapping hits, possible frame ERROR between 205 and 198,

Fln protein: MARLGIAIGSIGDAFKFEALRSYLAEFISTLLFVFAGVGSVMAYDKLTSDASLxxxxGLVGVGVAHALALFVAVSIAANISGGHVNPAVTFGLTLGGHITVLRAFFYWVSQLLGSIVACLLLKFTTGGLTTPIHSVASGMSTGEGVLMEIVITFGLVYTVYATAADPKKGDLGIIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFTDNWVYWVGPLIGGGLAGLVYGGIFISDESHVAVPVTEF*

Protein Length: 255

Fln nts: GGTCTCGTTTGGGAGTGTTTAATTCAGATTGAGTAAG_-_ATGGCCCGCCTGGGGATTGCAATTGGCAGCATTGGCGATGCGTTCAAGTTTGAAGCTTTGAGGTCATATCTTGCAGAGTTTATCTCCACTCTGCTCTTCGTATTTGCTGGTGTCGGATCTGTCATGGCTTACGATAAGCTGACCTCGGATGCATCTCTGxxxxxxxxxxxxGGTCTGGTCGGGGTGGGAGTGGCTCATGCCCTAGCGCTCTTTGTAGCTGTCTCCATCGCGGCTAACATTTCTGGTGGTCATGTTAACCCGGCTGTCACTTTCGGGCTTACCCTAGGCGGTCACATCACGGTCCTTCGCGCCTTTTTCTACTGGGTTTCTCAGCTCCTTGGGTCAATCGTGGCTTGCCTCCTCTTGAAGTTCACCACCGGTGGTTTGACGACACCCATTCACTCGGTGGCCTCGGGCATGAGCACGGGCGAGGGGGTGCTTATGGAGATCGTTATCACATTTGGTCTAGTCTACACCGTCTACGCCACGGCAGCCGACCCCAAGAAGGGCGACTTGGGCATCATCGCTCCCATCGCCATCGGTTTCATCGTGGGCGCTAACATCTTGGCCGCCGGTCCCTTCTCTGGGGGTTCCATGAACCCTGCCCGCTCCTTCGGTCCGGCCGTCGTAAGCGGAGATTTCACCGACAACTGGGTGTACTGGGTTGGCCCTCTGATCGGAGGCGGCCTCGCAGGTCTCGTCTACGGCGGCATCTTCATTTCCGACGAGTCTCACGTGGCCGTGCCAGTTACAGAATTCTGA___GATGACAGCAGACAGAAATTCAATTAGATTAAAATGAATGGGATGACTTGAACAGCGACTTCGATTAAGGTTGGGTTAAGAAAGCTCGTGCATTCAATCTTTTCTTTCTCGCATTTGTTTGTTTGAATTAGAATAGGTGTTGCGCTGAGAATTCGCCTCTGCAACAGATTGTACTCTTCTGGTGTATTCTACAATTTCTTGTGTTGGATGAACCTCTCTCCTGAATGTCAAAATGTGTTATGAGCC

Fln Alignment:

Contig24410___GIAIGSIGDAFKFEALRSYLAEFISTLLFVFAGVGSVMAYDKLTSDASLxxxGLVGVGVAHALALFVAVSIAANISGGHVNPAVTFGLTLGGHITVLRAFFYWVSQLLGSIVACXXXXXXXXXXXXPIHSVASGMSTGEGVLMEIVITFGLVYTVYATAADPKKGDLGIIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFTDNWVYWVGPXXXXXXXXXXXXXIFISDESHVAVPVTEF
O65860_______________GVAIGRPEEVTHPTAFKAALAELISTLIFVFAGEGSGMAFAKLTSDASTxxxGLVAVALAHGLGLFVAVAVGANISGGHVNPAVTFGALVGGHITLLRGILYWIAQLLGAIVACLLLKFTTGGLSTPIHSVASGMNTGEGVVMEIVITFALIYTVYATAADPKKGDLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFDPAVVSGDFTDNWVYWVGPLIGGGLAGIVYRGIFIGDDLHVPLPVSDF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
42		80	20		0.995493
76		16		83	0.994512
360	66		33		0.997452
494	66	33			0.997452
524		70	30		1.0
575		23		76	1.0
590		16		83	0.999991
593		83		16	0.999991
623		84	15		0.999986
743		89		10	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain