SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24395

Length: 1169 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24395

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isoflavone reductase-like protein CJP-6 n=1 Tax=Cryptomeria japonica RepID=Q8RYC0_CRYJA	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	NmrA-like	IPR008030	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39230.1	NmrA-like negative transcriptional regulator family protein chr4:18266024-18267604 REVERSE LENGTH=308	59%
RefSeq	Arabidopsis thaliana	NP_195634.1	NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313788.1	phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSD1

Fln msg:

Fln protein: MASSRILIIGGTGSIGRYIAKASIANGHPTFVLVRESTASNPQKAQLLESFKASGITLVQGSLENFASLVEAIKLVDVVICTVGRAQIADQFNIINAIKEVGTIKRFLPSEFGNIVEKEIGLEPVKSMYQLKAKIRRTIEAEGIPHTFISSNYFAGHFVPSLGQTGLTAPPRDKVVILGNGNAKAVFVVEEDVATYTIKAVDDPRTLNKTLYMKPPANILSVNELVGLWENKIGKTLDKVYVPEEQVIKSIQETQDFLLSLYHSTFVEGNQTNFEIGPNGVEASELYPEVKYTTIDEYLNQFV*

Protein Length: 305

Fln nts: ATCGCATACATCCTCAATTCTCAGAAGATAAAGTCAATGGGGAGAAAACGAG_-_ATGGCAAGCAGCAGGATTCTGATAATTGGAGGAACAGGTTCCATTGGTCGATATATTGCGAAAGCCAGCATTGCTAATGGCCATCCCACATTTGTTCTGGTCAGAGAATCCACGGCTTCTAATCCTCAGAAAGCGCAGCTCCTGGAGTCCTTCAAGGCCTCGGGAATAACTCTAGTCCAGGGATCTCTGGAAAATTTTGCAAGCCTGGTGGAGGCAATTAAGTTGGTGGATGTAGTGATCTGCACAGTGGGCAGAGCGCAGATAGCAGATCAGTTCAATATCATCAATGCTATCAAAGAGGTTGGCACTATCAAGAGGTTTCTGCCTTCTGAGTTTGGGAATATTGTTGAAAAAGAAATAGGGTTGGAGCCTGTAAAGAGTATGTACCAACTGAAAGCCAAAATCCGTCGGACAATTGAGGCAGAAGGCATTCCTCACACATTCATCTCTAGCAACTATTTTGCAGGGCATTTCGTTCCAAGCCTGGGACAGACTGGCCTCACAGCCCCTCCAAGGGACAAAGTTGTGATTCTTGGAAATGGAAATGCCAAAGCTGTGTTTGTGGTTGAGGAAGATGTTGCAACTTACACAATCAAGGCAGTGGATGATCCTAGAACTTTGAACAAGACTCTGTACATGAAGCCTCCTGCAAACATTTTGTCTGTGAATGAACTTGTGGGTTTATGGGAAAACAAGATTGGCAAGACTCTGGATAAGGTCTATGTACCGGAAGAGCAGGTTATCAAATCAATTCAAGAGACACAGGACTTTTTGTTATCGCTTTACCATTCCACTTTTGTGGAAGGCAATCAAACAAATTTTGAAATTGGACCGAATGGGGTAGAGGCCAGTGAATTATATCCTGAGGTAAAATACACTACAATTGACGAGTACCTGAATCAGTTTGTCTGA___ATTATCAGGTTGTTTCATGTTTGTTGTATGATTTAGGTCGAGATAACTAAGAGGTATTTTTATATATGTTCGTTGAAACTGGCCGTAGGCTTTAATGCAGAGATAAGTTATGTATAGGTTTGTAAACGAAATTATAGAGAACTAAATGTAGAGATTCAAGATCTCAGATCTTTATCTAATTTCTAATAATTAAGTTATATATTAG

Fln Alignment:

Contig24395___MASSRILIIGGTGSIGRYIAKASIANGHPTFVLVRESTASNPQKAQLLESFKASGITLVQGSLENFASLVEAIKLVDVVICTVGRAQIADQFNIINAIKEVGTIKRFLPSEFGNIVEKEIGLEPVKSMYQLKAKIRRTIEAEGIPHTFISSNYFAGHFVPSLGQTGLTAPPRDKVVILGNGNAKAVFVVEEDVATYTIKAVDDPRTLNKTLYMKPPANILSVNELVGLWENKIGKTLDKVYVPEEQVIKSIQETQDFLLSLYHSTFVEGNQTNFEIGPNGVEASELYPEVKYTTIDEYLNQFV
A9NSD1_______________MASSRILIIGGTGSIGRYVAKASIANGHPTFVLVRDSTASNPEKAQLLESFKASGITLLHGSLDNYASLLEAIKLVDVVICTVGAAQIADQFNIISAIKEVVSIKRFLPSEFGNVVEKEIGLDPVKSMYQLKAKVRRTIEAEGIPHTYISSNYFAGHFIPSLGQSGLTAPPRDKVVILGDGNAKAVFVVEEDVATYTIKAVDDPRTLNKTLYMRLPANTLSVNELVGLWENKIGKTLDKLYVPEEQVIKSIQDTQDFLLSLYHSTFVQGNQTNFEIGPNGVEATQLYPEVKYTTVDEYLNQFV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
193		63	36		1.0
290	83		16		0.994512
386	25			75	0.996473
388			25	75	0.996473
693		16		83	0.994512
847	50	50			1.0
952		20	80		0.995493
981	20			80	0.995493
1057		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain