SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24360

Length: 1666 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24360

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T9P1_VITVI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G15130.1	ATCCT2, CCT2 phosphorylcholine cytidylyltransferase2 chr4:8637793-8639388 FORWARD LENGTH=304	74%
RefSeq	Arabidopsis thaliana	NP_193249.5	phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002303347.1	predicted protein, partial [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg:

Fln protein: MVRKNGKRPANQRNDSSQVDPEPRQQSCAEIVYEPPVRFEPHPSPDPVKGERTEKPVRVYADGIYDLFHFGHARSLEQAKKVFPNTYLLVGCCNDEVTRRYKGKTVMTAAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPYADTSGTGNDVYAFVKSAGKFKETKRTDGISTSDVIMRILKGYNDYVMRNLDRGYTRKDLGVSYVKEKQLRVNMGITKLRQKVKEQQGQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHMMETAIKDKIQESLKRQNSRSPSPSKMLENAVQ*

Protein Length: 315

Fln nts: GAGTAAACAACGCGGACTAGGCGCGTATGCTATATGTAAGCCGGCAAGGCGCGTGGCCCAATGTTCACACAATCGTAGCCAGGGGTTCACTCTCCACTCGCTCCAAGTGTACTCCCCAATATATGCTTACTCGCCCATAATCTTGTCAGATCATCCCATCCTGAATTTAGAAGAGTTGATCTTTTTTAAGCTAATCGTTTCCTGTGCTTAGGGATTTTTTTGCTTCGATTTCGTTTGCGATCGCAGTGGCATTTTACACAATTGAGAAGGATAAAACG_-_ATGGTTCGCAAGAATGGAAAGAGACCCGCCAACCAGAGAAATGATTCATCGCAGGTGGATCCAGAACCCCGGCAGCAGAGCTGTGCAGAGATTGTCTACGAGCCGCCAGTGAGATTCGAACCGCACCCATCTCCAGATCCCGTGAAGGGCGAGAGGACTGAGAAGCCCGTCAGGGTCTATGCGGATGGAATTTATGATTTGTTTCACTTTGGGCATGCGCGATCACTGGAACAGGCCAAGAAAGTGTTTCCAAACACATACCTCCTTGTGGGTTGCTGCAATGATGAAGTCACTCGCAGGTATAAGGGAAAAACTGTAATGACTGCGGCTGAGCGCTATGAATCCCTTCGCCATTGCAGGTGGGTTGACGAAGTTATCCCAGATGCTCCATGGGTGATCAATCAAGAATTCTTAGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGTATGCCGATACCAGTGGAACTGGCAACGATGTCTATGCATTTGTCAAGTCAGCTGGAAAATTTAAGGAAACAAAGCGGACCGATGGCATCTCAACATCGGATGTCATAATGAGGATACTTAAAGGCTACAATGACTATGTTATGCGCAACCTTGATCGTGGATACACAAGGAAAGACCTTGGAGTTAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGGGAATAACAAAACTACGTCAAAAAGTGAAGGAACAACAAGGGCAAATGGGGAAAAAGTTACATACGGTTGCCAAGACAGCTGGCATGCATCACAGTGAATGGGTTGAGAATGCTGATCGTTGGGTGGCTGGCTTTTTAGAAAAGTTTGAAGAGGGGTGTCATATGATGGAAACAGCAATTAAAGACAAAATACAAGAGAGCCTGAAGAGGCAGAACTCAAGAAGCCCATCACCTTCAAAAATGCTGGAGAACGCAGTGCAGTAG___CATAAGCTTGTGCTATCTGCCAAGTCATTCATTGATTCTTACTAGACAATTTTTGTATGTCTCCTACATTTTGCTCAGGAAACTGATGTAAATTGATGTAATTTTGCTTAGAGTTCATTGCTCAGGAAACTGATGTAATTTTTGTATGTCTCCTACATTTTGACATTTTGTTCAATCGCTGGTTGATTATACCGTTTCTCTTTCATCATATGTTAACCGTTTCAAGTCCTATGGTGTTTACGGTCAAGCACCGTGATGCTCATTAGCTATGTAATAAATCAAATTATTTTTGAGTTTTGACTCAATGTCTCTTTGCTGTTAAGTATTCCTGATTCTGGAATTCTGGATTCTAAGACCATTACCATGATAATGGATTTTTTATCGTATCCCAGGATTTGGTTCCGTAAGTTCTATGGAAATGTTAATGCACTGTAAATAAAACCCTT

Fln Alignment:

Contig24360___MVRKNGKRPANQRNDSSQVDPEPRQQSCAEIVYEPPVRFEPHPSPDPVKGERTEKPVRVYADGIYDLFHFGHARSLEQAKKVFPNTYLLVGCCNDEVTRRYKGKTVMTAAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPYADTSGTGNDVYAFVKSAGKFKETKRTDGISTSDVIMRILKGYNDYVMRNLDRGYTRKDLGVSYVKEKQLRVNMGITKLRQKVKEQQGQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHMMETAIKDKIQESLKRQNSRSPSPSKML
A9NUF9_______________MVRRDRKKPTIKRNDSSQVDQEPRQQSCAETVYEPPVRFEPHPSPDPVKSEWTEKPIRVYADGIYDLFHFGHARSLEQAKKLFPNTFLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINREFIDKHQIDYVAHDALPYADTSGAGKDVYQFVKSVGKFKETRRTNGISTSDVIMRMLKGYNEYVMRNLDRGYTRKDLGVSYVKEKQFRVNMGITKLRQRVREQQEQMGKKLHTVAKTAGMHHSEWVENADRLVAGFLEKFEEGCHMMETAIKEKIQESLKRQNSRSPSPSKMV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
62			18	72	0.999994
159		27		72	1.0
1216		91		8	0.999766
1485	17			82	1.0
1502	78		14		0.999974
1507	80		20		0.999996
1512		11		88	0.923564
1558			75	25	0.996473
1594	12		87		0.992554
1599			50	50	1.0
1600	25			75	0.996473
1603		25		75	0.996473
1606		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain